PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G037100.1.p
Common NameSb07g003170, SORBIDRAFT_07g003170
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 384aa    MW: 39947.1 Da    PI: 9.2226
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G037100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.51.3e-12108152347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +WT+eE+++++ + ++lG+g+W+ I+r     Rt+ q+ s+ qky
  Sobic.007G037100.1.p 108 AWTEEEHKKFLLGLNKLGKGDWRGISRNYVISRTPTQVASHAQKY 152
                           7*****************************89************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.103.3E-43049IPR001878Zinc finger, CCHC-type
PROSITE profilePS501588.6973146IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129418.297100157IPR017930Myb domain
SuperFamilySSF466896.21E-16102158IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-17104156IPR006447Myb domain, plants
SMARTSM007171.6E-10105155IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-10107154IPR009057Homeodomain-like
PfamPF002494.4E-11108152IPR001005SANT/Myb domain
CDDcd001678.85E-9108153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MTRDGVPPAA PPPVAGSGSG GAVAAAGDGP RRCSQCGHHG HNARTCTARP VKLFGVRIGD  60
KPIRKSASMG NIAHLAAEGS GGGGGGGGSR EEGYGSDGER PHKKRGEAWT EEEHKKFLLG  120
LNKLGKGDWR GISRNYVISR TPTQVASHAQ KYFNRQTNVH RRKRRSSLFD MVIDDSPDQL  180
PLSRSSSQEV EQQHLDDPQP VAALPAPVVS PATVVPPSVP VEVPASVPAP VQVPVPVPAQ  240
VVTSQPMEQD SVASSSSAGE AGAVMPGAMP PYLYPMMIPP PYYHPAFVPV PCYGYVPFYY  300
GPPGVAQAPH EVVKPVAVHS TPPLNVKDLY NMSELSLKGD SDANGGVPAS PLPPKPIGGP  360
ERQSAFHGKG TSGSSGGLIP AVK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G037100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0379840.0BT037984.1 Zea mays full-length cDNA clone ZM_BFb0205J21 mRNA, complete cds.
GenBankEU9700250.0EU970025.1 Zea mays clone 338730 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002443842.10.0transcription factor MYBS3
TrEMBLC5YN410.0C5YN41_SORBI; Uncharacterized protein
STRINGSb07g003170.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129002629
Representative plantOGRP1447944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.18e-43MYB_related family protein