PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G025300.1.p
Common NameSb07g002210, SORBIDRAFT_07g002210
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 320aa    MW: 33937.6 Da    PI: 6.4026
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G025300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH452e-1467113555
                           HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                           h   Er RR+r+++ f eL+  +P+ +     +K +Ka+i+e+A++YIk+L+
  Sobic.007G025300.1.p  67 HIVSERSRRNRLRDYFGELKAYIPQiP-----EKSDKATIVEHAIDYIKYLE 113
                           7789*********************88.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.21862112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-1664127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.97E-1465115No hitNo description
Gene3DG3DSA:4.10.280.101.6E-1667127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.7E-1267113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-1268118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MENHHSSAAP PNAKDGSSGI PEENKDVAVP NLSSAPEVAA TVAASNDDDV SKGKNVVAAD  60
NEELKPHIVS ERSRRNRLRD YFGELKAYIP QIPEKSDKAT IVEHAIDYIK YLEKMKAMLE  120
KRKQELALAR QVGVVAAASS SSAPPPPPPP PPQTSHGMAV AAMPSDVPAG ACSYVPPPPP  180
PQPAVPVPAP QLLPATMSSD VVPQPQPLQP APPQARIITA TPVGFQTWSW PDLVLSVSND  240
TAHISVSAPR HRGMWTKVMV LSVLNKYGID VVTAQVDSDA VRSVFNIYAR VTAMGGGNPS  300
ALEVYQLAVS EILVWLTTS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G025300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008650124.29e-95transcription factor bHLH95
TrEMBLA0A1B6PF710.0A0A1B6PF71_SORBI; Uncharacterized protein
STRINGSb07g002210.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Representative plantOGRP1986822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.15e-13bHLH family protein