PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G025200.1.p
Common NameSb07g002200, SORBIDRAFT_07g002200
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 276aa    MW: 29689.9 Da    PI: 10.309
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G025200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.62.3e-133788355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHHH CS
                   HLH  3 rahnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksLq 55
                          r+  ++Er+RR+r+++ f+eL +l+P+      ++K ++K + +e+++ YI+sL+
  Sobic.007G025200.1.p 37 RMRRIAERKRRSRLRNHFSELESLVPNvT---ENEKiNDKGDLVEQTIAYIQSLE 88
                          56789**********************77...88888****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.06E-1331107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.983487IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-113888IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-1239106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-84093IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.94E-114189No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MASSTTIPAL EENTNAVVVS AGNAADNKEP RKSRRNRMRR IAERKRRSRL RNHFSELESL  60
VPNVTENEKI NDKGDLVEQT IAYIQSLERT KAMLEKRKQQ LALARQVAAS SSSAPPQTAR  120
GKMAPAPVAP LLQPLAAAVP VSAAADDVPQ PQPLVQQPLA VAAAVPPPQP LPVAAAGQGG  180
FQTWSWPNLV LNVSNNNAYI NVCVPRHLGM QNMVMVLSVL NNHGIDVVTT QVDADAARSV  240
LNFYTRVTRM GGGNPSSEEV YKLATSEILL LLNTN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G025200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008650124.23e-61transcription factor bHLH95
TrEMBLC5YMJ40.0C5YMJ4_SORBI; Uncharacterized protein
STRINGSb07g002200.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Representative plantOGRP12261548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.11e-07FER-like regulator of iron uptake