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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.007G013800.1.p |
Common Name | Sb07g001250, SORBIDRAFT_07g001250 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
MIKC_MADS |
Protein Properties |
Length: 223aa MW: 25152 Da PI: 7.552 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.007G013800.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 76.8 | 1.7e-24 | 10 | 56 | 2 | 48 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
rien rqvtf+kRr+g+lKKA ELSvLCda + +iifs +gkly+
Sobic.007G013800.1.p 10 RIENPVHRQVTFCKRRAGLLKKARELSVLCDAHIGIIIFSAHGKLYD 56
8********************************************97 PP
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2 | K-box | 49.3 | 2.1e-17 | 87 | 171 | 16 | 99 |
K-box 16 slqqelakLkkeienLqreqRhllGedLe.sLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99
+qe L++ei+ Lq+ +R + G+ + +++ eL+ Le+ Le + +iRs K+++++++i+ l+ ke +l+ +n+ Lr+k+
Sobic.007G013800.1.p 87 DPKQETMVLQQEINLLQKGLRYIYGNRANeHMNVDELNALERYLEIWMYNIRSAKMQIMIQEIQALKSKEGMLKAANEILREKIV 171
5689999******************998626****************************************************96 PP
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Protein Features
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50066 | 29.352 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.62E-27 | 1 | 75 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.1E-35 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.79E-39 | 2 | 79 | No hit | No description |
PRINTS | PR00404 | 4.2E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.4E-23 | 10 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 10.94 | 85 | 176 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 6.1E-21 | 88 | 170 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem |
GO:0048364 | Biological Process | root development |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 223 aa
Download sequence Send
to blast |
MARGKVQLRR IENPVHRQVT FCKRRAGLLK KARELSVLCD AHIGIIIFSA HGKLYDLATT 60 GTMEELIDRY KTASGEAADG SGDNRMDPKQ ETMVLQQEIN LLQKGLRYIY GNRANEHMNV 120 DELNALERYL EIWMYNIRSA KMQIMIQEIQ ALKSKEGMLK AANEILREKI VEQSSLLDVG 180 MVVADQQNGH FSTVPLIEEI TNPLTILSGY SNCRGSEMGY SF*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in leaves and spikelets (rice flower). {ECO:0000269|Ref.7}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. |
UniProt | Probable transcription factor. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ727896 | 0.0 | KJ727896.1 Zea mays clone pUT5990 MADS transcription factor (MADS45) mRNA, partial cds. |
Publications
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- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Lee S, et al.
Further characterization of a rice AGL12 group MADS-box gene, OsMADS26. Plant Physiol., 2008. 147(1): p. 156-68 [PMID:18354041] - Khong GN, et al.
OsMADS26 Negatively Regulates Resistance to Pathogens and Drought Tolerance in Rice. Plant Physiol., 2015. 169(4): p. 2935-49 [PMID:26424158]
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