PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G254900.1.p
Common NameSb06g031880, SORBIDRAFT_06g031880
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WOX
Protein Properties Length: 328aa    MW: 33453.4 Da    PI: 8.7857
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G254900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.98.5e-1943103357
                           --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
              Homeobox   3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                           +R+t+t+eq+++L+e+++    r p+ e+++++++ l    +++ ++V++WFqN++a+e++
  Sobic.006G254900.1.p  43 SRWTPTPEQIRILKEFYYGcgIRSPNSEQIQRITAMLrqhgKIEGKNVFYWFQNHKARERQ 103
                           6*****************7568*************************************97 PP
2Wus_type_Homeobox111.93.4e-3643105465
     Wus_type_Homeobox   4 tRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                           +RWtPtpeQi+iL+e y+ +G+r+Pn+e+iqrita+L+++Gkie+kNVfyWFQN+kaRerqk+
  Sobic.006G254900.1.p  43 SRWTPTPEQIRILKEFYYgCGIRSPNSEQIQRITAMLRQHGKIEGKNVFYWFQNHKARERQKR 105
                           8***************9989*****************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003898.6E-640108IPR001356Homeobox domain
SuperFamilySSF466897.45E-1142107IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.3E-743103IPR009057Homeodomain-like
PfamPF000461.1E-1643103IPR001356Homeobox domain
PROSITE profilePS500719.50744104IPR001356Homeobox domain
CDDcd000868.20E-744105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MAANVGAGRS AVGGGGGGGA GGTGTAAASG SVATTAVCRP IGSRWTPTPE QIRILKEFYY  60
GCGIRSPNSE QIQRITAMLR QHGKIEGKNV FYWFQNHKAR ERQKRRLTNL DVNVPTAAAA  120
GAADASTHLG VLSLSSPSGA APPSPTLGFY AGNGGAGSTV LLDTSSDCAA MATETCFLQD  180
YMGVMGTGSA AAASPWACFS SSNTMAAAAA RAPTVTRAPE TLPLFPTGGD DSQPRRPRHG  240
VPVPVAAGEA IRGGSSSSRY LPFWGAAPTT ASATSIGIQQ QHQLLQLQEQ YSFYSNAMPG  300
TGSQDASAAS LELSLSSWCS PYPAGTM*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young leaf primordia. Expressed in branch an floral meristems. Transiently expressed in the shoot apex. {ECO:0000269|PubMed:16284419}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor required for the formation and development of tiller buds and panicles (PubMed:25697101). Required for tiller formation and female sterility (PubMed:27194802). Required for the early developmental stages of axillary meristem formation (PubMed:25841039). Plays a role in maintaining the axillary premeristem zone and in promoting the formation of the axillary meristem by promoting OSH1 expression (PubMed:25841039). Does not seem to be involved in maintenance of the shoot apical meristem (SAM) (PubMed:25841039). {ECO:0000269|PubMed:25697101, ECO:0000269|PubMed:25841039, ECO:0000269|PubMed:27194802}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G254900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by the cytokinin 6-benzylaminopurine. {ECO:0000269|PubMed:17351053}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM2347451e-159AM234745.1 Zea mays mRNA for WUS2 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021319774.10.0LOW QUALITY PROTEIN: WUSCHEL-related homeobox 1A
SwissprotQ7XM131e-76WOX1_ORYSJ; WUSCHEL-related homeobox 1
TrEMBLA0A1Z5RFI90.0A0A1Z5RFI9_SORBI; Uncharacterized protein
STRINGSb06g031880.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124653136
Representative plantOGRP90871114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.12e-33WOX family protein
Publications ? help Back to Top
  1. Lu Z, et al.
    MONOCULM 3, an ortholog of WUSCHEL in rice, is required for tiller bud formation.
    J Genet Genomics, 2015. 42(2): p. 71-8
    [PMID:25697101]
  2. Tanaka W, et al.
    Axillary Meristem Formation in Rice Requires the WUSCHEL Ortholog TILLERS ABSENT1.
    Plant Cell, 2015. 27(4): p. 1173-84
    [PMID:25841039]
  3. Mjomba FM, et al.
    Homeobox Is Pivotal for OsWUS Controlling Tiller Development and Female Fertility in Rice.
    G3 (Bethesda), 2016. 6(7): p. 2013-21
    [PMID:27194802]