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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.006G247000.1.p |
Common Name | Sb06g031230, SORBIDRAFT_06g031230 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
ERF |
Protein Properties |
Length: 173aa MW: 18628.7 Da PI: 6.3564 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.006G247000.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 58.1 | 2.1e-18 | 6 | 55 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
+++GVr+++ +g+Wv+eIr+p +r++lg++ tae+Aa+a+++a++ + g
Sobic.006G247000.1.p 6 RFRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTYETAEDAARAYDEAARLMSG 55
69******9.**********8.....334**********************98766 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 173 aa
Download sequence Send
to blast |
MPKLQRFRGV RQRHWGSWVS EIRHPLLKTR IWLGTYETAE DAARAYDEAA RLMSGPAART 60 NFPLSVSGGG GTLSPTLRAK LEKCCTAPAQ EPQHGADVSR TGGGVGRDDV DGSSRKEVQA 120 AVKVDPDADD PDGEEYIEEM IRELTYYGPV EIQQHHPPSA SSAAAASSSA IR*
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Functional Description ? help
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Source |
Description |
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK108355 | 2e-49 | AK108355.1 Oryza sativa Japonica Group cDNA clone:002-142-C04, full insert sequence. |