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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Sobic.006G241000.1.p |
| Common Name | Sb06g030700, SORBIDRAFT_06g030700 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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| Family |
WOX |
| Protein Properties |
Length: 246aa MW: 26992.7 Da PI: 9.3729 |
| Description |
WOX family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sobic.006G241000.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 62.7 | 5.4e-20 | 93 | 152 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
+R++++++q+++Le l++ r+p+ ++e+++++l +++ ++V++WFqN++a+e++
Sobic.006G241000.1.p 93 TRWNPSPDQIRVLEMLYRGgMRTPNSFQIEQITEELgkygRIEGKNVFYWFQNHKARERQ 152
8*****************99**************************************97 PP
|
| 2 | Wus_type_Homeobox | 114.3 | 6.1e-37 | 92 | 154 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
+tRW+P+p+Qi++Le+ly+ G+rtPn+ +i++it+eL +yG+ie+kNVfyWFQN+kaRerqkq
Sobic.006G241000.1.p 92 TTRWNPSPDQIRVLEMLYRGGMRTPNSFQIEQITEELGKYGRIEGKNVFYWFQNHKARERQKQ 154
69***********************************************************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 246 aa
Download sequence Send
to blast |
MRLHHLHVAY LDKAAAGSPP PSSPPSISLV ASQSSSAAIP LALQQYCLRP LAPKISFPEA 60
RKMVVLPEFA RVRNASSRLL NCTVQVPTAG GTTRWNPSPD QIRVLEMLYR GGMRTPNSFQ 120
IEQITEELGK YGRIEGKNVF YWFQNHKARE RQKQKRAALL TLSTTATSTL LPLSPAAAET 180
KDGVETKKEE ACEDASSRKR RCRTWDGDVV HGGGGDDAAK EVADDYYTDD VTLELFPLRP 240
QGKAS*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
| UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | BT085195 | 0.0 | BT085195.1 Zea mays full-length cDNA clone ZM_BFb0326G17 mRNA, complete cds. |
| GenBank | EU964275 | 0.0 | EU964275.1 Zea mays clone 277479 WUSCHEL-related homeobox 4 mRNA, complete cds. |
