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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.006G233500.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bZIP | ||||||||
Protein Properties | Length: 409aa MW: 45366.6 Da PI: 6.7552 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.9 | 2.9e-10 | 118 | 147 | 5 | 34 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeek 34 ++ rr+++NReAAr+sR+RKka+i +Le+ Sobic.006G233500.4.p 118 RVMRRLAQNREAARKSRLRKKAYIHQLETS 147 5679***********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 5.1E-5 | 114 | 174 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.668 | 116 | 160 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.1E-7 | 118 | 152 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.6E-6 | 119 | 160 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 4.0E-7 | 120 | 162 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 121 | 136 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 8.7E-29 | 204 | 280 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 409 aa Download sequence Send to blast |
MMELYSGYLE DHFNLHKLSI GSAASPPEYM TSASPAQFAA VPLRMGYGRP APSTAPPAPV 60 MAGMWSSEAF KVVDSGHGTS ASTVMEADTK FETRLEDVQV ALEPTRSTDQ ETSKPPERVM 120 RRLAQNREAA RKSRLRKKAY IHQLETSRMK LAQLELELQR ARQQGAYANG NMGDSALGYA 180 GSIDPGVSAF EIEYSHWVDE QKRHTAELMS ALQGQQTSEL ELRLLVETGL SNYEHLFRIK 240 AMAANADVFH VMSGMWKTPA ERFFLWIGGF RPSEVLKILS PQLEPLTEPQ RMLVGGLQHT 300 STQAEDALSQ GMEKLQQNLA ETLTAEADPF GPPDAYMLQM ATAVDRLKEL VGFVTQADHL 360 RLTTLQQMHK ILTTRQAARG LLALGDYFQR LRTLSSLWAA RPREAAIS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00502 | DAP | Transfer from AT5G10030 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.006G233500.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT069355 | 0.0 | BT069355.1 Zea mays full-length cDNA clone ZM_BFc0160P02 mRNA, complete cds. | |||
GenBank | BT088145 | 0.0 | BT088145.1 Zea mays full-length cDNA clone ZM_BFc0036D12 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021318936.1 | 0.0 | transcription factor TGAL6-like isoform X1 | ||||
Swissprot | A0A0P0WFC8 | 0.0 | TGAL6_ORYSJ; Transcription factor TGAL6 | ||||
TrEMBL | A0A1B6PNH5 | 0.0 | A0A1B6PNH5_SORBI; Uncharacterized protein | ||||
STRING | Sb06g030100.1 | 0.0 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10030.2 | 1e-119 | TGACG motif-binding factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.006G233500.4.p |