PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.006G233500.3.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bZIP

Protein Properties

Length: 409aa MW: 45366.6 Da PI: 6.7552

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.006G233500.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.9	2.9e-10	118	147	5	34
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeek 34 ++ rr+++NReAAr+sR+RKka+i +Le+ Sobic.006G233500.3.p 118 RVMRRLAQNREAARKSRLRKKAYIHQLETS 147 5679***********************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.1E-5	114	174	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.668	116	160	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.1E-7	118	152	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.6E-6	119	160	No hit	No description
Gene3D	G3DSA:1.20.5.170	4.0E-7	120	162	No hit	No description
PROSITE pattern	PS00036	0	121	136	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	8.7E-29	204	280	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009409	Biological Process	response to cold
GO:0042742	Biological Process	defense response to bacterium
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence Send to blast
MMELYSGYLE DHFNLHKLSI GSAASPPEYM TSASPAQFAA VPLRMGYGRP APSTAPPAPV 60 MAGMWSSEAF KVVDSGHGTS ASTVMEADTK FETRLEDVQV ALEPTRSTDQ ETSKPPERVM 120 RRLAQNREAA RKSRLRKKAY IHQLETSRMK LAQLELELQR ARQQGAYANG NMGDSALGYA 180 GSIDPGVSAF EIEYSHWVDE QKRHTAELMS ALQGQQTSEL ELRLLVETGL SNYEHLFRIK 240 AMAANADVFH VMSGMWKTPA ERFFLWIGGF RPSEVLKILS PQLEPLTEPQ RMLVGGLQHT 300 STQAEDALSQ GMEKLQQNLA ETLTAEADPF GPPDAYMLQM ATAVDRLKEL VGFVTQADHL 360 RLTTLQQMHK ILTTRQAARG LLALGDYFQR LRTLSSLWAA RPREAAIS*

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence Send to blast

MMELYSGYLE DHFNLHKLSI GSAASPPEYM TSASPAQFAA VPLRMGYGRP APSTAPPAPV  60
MAGMWSSEAF KVVDSGHGTS ASTVMEADTK FETRLEDVQV ALEPTRSTDQ ETSKPPERVM  120
RRLAQNREAA RKSRLRKKAY IHQLETSRMK LAQLELELQR ARQQGAYANG NMGDSALGYA  180
GSIDPGVSAF EIEYSHWVDE QKRHTAELMS ALQGQQTSEL ELRLLVETGL SNYEHLFRIK  240
AMAANADVFH VMSGMWKTPA ERFFLWIGGF RPSEVLKILS PQLEPLTEPQ RMLVGGLQHT  300
STQAEDALSQ GMEKLQQNLA ETLTAEADPF GPPDAYMLQM ATAVDRLKEL VGFVTQADHL  360
RLTTLQQMHK ILTTRQAARG LLALGDYFQR LRTLSSLWAA RPREAAIS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00502	DAP	Transfer from AT5G10030	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.006G233500.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT069355	0.0	BT069355.1 Zea mays full-length cDNA clone ZM_BFc0160P02 mRNA, complete cds.
GenBank	BT088145	0.0	BT088145.1 Zea mays full-length cDNA clone ZM_BFc0036D12 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021318936.1	0.0	transcription factor TGAL6-like isoform X1
Swissprot	A0A0P0WFC8	0.0	TGAL6_ORYSJ; Transcription factor TGAL6
TrEMBL	A0A1B6PNH5	0.0	A0A1B6PNH5_SORBI; Uncharacterized protein
STRING	Sb06g030100.1	0.0	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10030.2	1e-119	TGACG motif-binding factor 4

Link Out ? help Back to Top
Phytozome	Sobic.006G233500.3.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Okada A, et al. OsTGAP1, a bZIP transcription factor, coordinately regulates the inductive production of diterpenoid phytoalexins in rice. J. Biol. Chem., 2009. 284(39): p. 26510-8 [PMID:19635799] Okada K The biosynthesis of isoprenoids and the mechanisms regulating it in plants. Biosci. Biotechnol. Biochem., 2011. 75(7): p. 1219-25 [PMID:21737944] Yamane H Biosynthesis of phytoalexins and regulatory mechanisms of it in rice. Biosci. Biotechnol. Biochem., 2013. 77(6): p. 1141-8 [PMID:23748776] Miyamoto K, et al. Identification of target genes of the bZIP transcription factor OsTGAP1, whose overexpression causes elicitor-induced hyperaccumulation of diterpenoid phytoalexins in rice cells. PLoS ONE, 2014. 9(8): p. e105823 [PMID:25157897] Miyamoto K, et al. Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells. J. Plant Physiol., 2015. 173: p. 19-27 [PMID:25462074]