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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.006G233500.2.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
bZIP |
Protein Properties |
Length: 409aa MW: 45366.6 Da PI: 6.7552 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.006G233500.2.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 31.9 | 2.9e-10 | 118 | 147 | 5 | 34 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeek 34
++ rr+++NReAAr+sR+RKka+i +Le+
Sobic.006G233500.2.p 118 RVMRRLAQNREAARKSRLRKKAYIHQLETS 147
5679***********************985 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009409 | Biological Process | response to cold |
GO:0042742 | Biological Process | defense response to bacterium |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 409 aa
Download sequence Send
to blast |
MMELYSGYLE DHFNLHKLSI GSAASPPEYM TSASPAQFAA VPLRMGYGRP APSTAPPAPV 60 MAGMWSSEAF KVVDSGHGTS ASTVMEADTK FETRLEDVQV ALEPTRSTDQ ETSKPPERVM 120 RRLAQNREAA RKSRLRKKAY IHQLETSRMK LAQLELELQR ARQQGAYANG NMGDSALGYA 180 GSIDPGVSAF EIEYSHWVDE QKRHTAELMS ALQGQQTSEL ELRLLVETGL SNYEHLFRIK 240 AMAANADVFH VMSGMWKTPA ERFFLWIGGF RPSEVLKILS PQLEPLTEPQ RMLVGGLQHT 300 STQAEDALSQ GMEKLQQNLA ETLTAEADPF GPPDAYMLQM ATAVDRLKEL VGFVTQADHL 360 RLTTLQQMHK ILTTRQAARG LLALGDYFQR LRTLSSLWAA RPREAAIS*
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT069355 | 0.0 | BT069355.1 Zea mays full-length cDNA clone ZM_BFc0160P02 mRNA, complete cds. |
GenBank | BT088145 | 0.0 | BT088145.1 Zea mays full-length cDNA clone ZM_BFc0036D12 mRNA, complete cds. |
Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Okada A, et al.
OsTGAP1, a bZIP transcription factor, coordinately regulates the inductive production of diterpenoid phytoalexins in rice. J. Biol. Chem., 2009. 284(39): p. 26510-8 [PMID:19635799] - Okada K
The biosynthesis of isoprenoids and the mechanisms regulating it in plants. Biosci. Biotechnol. Biochem., 2011. 75(7): p. 1219-25 [PMID:21737944] - Yamane H
Biosynthesis of phytoalexins and regulatory mechanisms of it in rice. Biosci. Biotechnol. Biochem., 2013. 77(6): p. 1141-8 [PMID:23748776] - Miyamoto K, et al.
Identification of target genes of the bZIP transcription factor OsTGAP1, whose overexpression causes elicitor-induced hyperaccumulation of diterpenoid phytoalexins in rice cells. PLoS ONE, 2014. 9(8): p. e105823 [PMID:25157897] - Miyamoto K, et al.
Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells. J. Plant Physiol., 2015. 173: p. 19-27 [PMID:25462074]
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