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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.006G228300.1.p |
Common Name | Sb06g029680, SORBIDRAFT_06g029680 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
bHLH |
Protein Properties |
Length: 455aa MW: 47755.2 Da PI: 6.7222 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.006G228300.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 12.3 | 0.00031 | 343 | 375 | 17 | 54 |
HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
++ L++l+ + +K + a++L +++eYIk L
Sobic.006G228300.1.p 343 GDRVTALQQLVAPF-----GKTDTASVLHETIEYIKFL 375
55666677777776.....8****************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter |
GO:0005634 | Cellular Component | nucleus |
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding |
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 455 aa
Download sequence Send
to blast |
MGDHAEMLHA APAMYNGVGA GAAAPHGGWW NTTAVPATTC STELAGFTTW SSALAASYDL 60 AAEGGKAKCA ATTASSESPG NNSSVTFQEP ASVTDPAGVG TAVVQQPLAG YTDWTHPYMS 120 SGATTLHGFL QDGHQQDMSS TTEQSAMTAS SLMNPSSNNL ALALQGHHHQ EQDHQQQMLS 180 SFGSELLLSP TSPYGFQSSL LRSLMEPTAT AAAKPQALPG YQQYDQYQQM GMGQARFPPA 240 GATREALQFT NDAPFWNPSA AGFGVAPAPA PDQASSVRSV KPSPTAARTT ATLALKTALE 300 GVGESASSII TKKKANGEPA FKKSRLETPS PLPTFKVRKE KLGDRVTALQ QLVAPFGKTD 360 TASVLHETIE YIKFLHDQVG VLSAPYLKNN GHHQVPHLKS SSPDKSNKDD NSHAGEVSLK 420 GRGLCLVPIS STFAVASEVP VDFVWSTPFA ANFR*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU975193 | 0.0 | EU975193.1 Zea mays clone 484008 DNA binding protein mRNA, complete cds. |