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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.006G228300.1.p | ||||||||
Common Name | Sb06g029680, SORBIDRAFT_06g029680 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bHLH | ||||||||
Protein Properties | Length: 455aa MW: 47755.2 Da PI: 6.7222 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.3 | 0.00031 | 343 | 375 | 17 | 54 |
HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ L++l+ + +K + a++L +++eYIk L Sobic.006G228300.1.p 343 GDRVTALQQLVAPF-----GKTDTASVLHETIEYIKFL 375 55666677777776.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.363 | 326 | 375 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.22E-4 | 336 | 379 | No hit | No description |
SuperFamily | SSF47459 | 2.75E-10 | 336 | 393 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.8E-7 | 336 | 384 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 455 aa Download sequence Send to blast |
MGDHAEMLHA APAMYNGVGA GAAAPHGGWW NTTAVPATTC STELAGFTTW SSALAASYDL 60 AAEGGKAKCA ATTASSESPG NNSSVTFQEP ASVTDPAGVG TAVVQQPLAG YTDWTHPYMS 120 SGATTLHGFL QDGHQQDMSS TTEQSAMTAS SLMNPSSNNL ALALQGHHHQ EQDHQQQMLS 180 SFGSELLLSP TSPYGFQSSL LRSLMEPTAT AAAKPQALPG YQQYDQYQQM GMGQARFPPA 240 GATREALQFT NDAPFWNPSA AGFGVAPAPA PDQASSVRSV KPSPTAARTT ATLALKTALE 300 GVGESASSII TKKKANGEPA FKKSRLETPS PLPTFKVRKE KLGDRVTALQ QLVAPFGKTD 360 TASVLHETIE YIKFLHDQVG VLSAPYLKNN GHHQVPHLKS SSPDKSNKDD NSHAGEVSLK 420 GRGLCLVPIS STFAVASEVP VDFVWSTPFA ANFR* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.20111 | 0.0 | leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.006G228300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU975193 | 0.0 | EU975193.1 Zea mays clone 484008 DNA binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002447167.1 | 0.0 | transcription factor bHLH112 | ||||
TrEMBL | C5YGN2 | 0.0 | C5YGN2_SORBI; Uncharacterized protein | ||||
STRING | Sb06g029680.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2216 | 37 | 87 | Representative plant | OGRP14841 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61660.1 | 6e-42 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.006G228300.1.p |
Entrez Gene | 8066851 |