 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sobic.006G202300.2.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
| Family |
G2-like |
| Protein Properties |
Length: 273aa MW: 30045.3 Da PI: 9.6464 |
| Description |
G2-like family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sobic.006G202300.2.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | G2-like | 107.3 | 8.5e-34 | 17 | 71 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kprlrWtp+LH+rFveav++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl
Sobic.006G202300.2.p 17 KPRLRWTPDLHQRFVEAVTRLGGPDKATPKSVLRLMGIKGLTLYHLKSHLQKYRL 71
79****************************************************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 273 aa
Download sequence Send
to blast |
MLRGSYGCGG AASRDPKPRL RWTPDLHQRF VEAVTRLGGP DKATPKSVLR LMGIKGLTLY 60
HLKSHLQKYR LGIQGKKSTG LELATGGVFS QGLSSTTAHP PGVPDEGKST REIALSNALR 120
YQIQVQRKLQ EQIEVQKKLQ MRIEAQGKYL KTILEKAQTN ISFDTDASNG IESTRSQLMG 180
LNQALSGFMD NATQVCKENR KQLVKALSDD NDKDNLGFQL YHVGSQEAKE VKCTPKTEDS 240
LLLDLNIEGG YDLSSRGMQA CELELKINQQ IG*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 6j4r_A | 6e-21 | 17 | 70 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_B | 6e-21 | 17 | 70 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_C | 6e-21 | 17 | 70 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_D | 6e-21 | 17 | 70 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | JX469979 | 0.0 | JX469979.1 Zea mays subsp. mays clone UT3339 G2-like transcription factor mRNA, partial cds. |
