PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G197400.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 344aa    MW: 36285.7 Da    PI: 6.4048
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G197400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-1284135155
                           CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +r++h ++Er+RR+++N+ ++ Lr+l+P +   +  + + a+++  A++++k+L+
  Sobic.006G197400.1.p  84 QRMNHIAVERNRRRQMNEYLAALRSLMPDS---YVHRSDQASVVSGAIDFVKELE 135
                           79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.82E-1582139No hitNo description
SuperFamilySSF474592.36E-1782153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.32683134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-1484153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-1084135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-1189140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MALEALCTTT SDVLVYDTFN AAAAACAASA GTGSFLFGNA APVEVPPAAA MASQANGESG  60
VQQVRRNRRR RQRSAKNAVD AESQRMNHIA VERNRRRQMN EYLAALRSLM PDSYVHRSDQ  120
ASVVSGAIDF VKELEQQLQS LEAQKLALNQ QQRSDKAAER DAAQPSPGRD DPASAGNNSG  180
DAAARGEVSA PELQPQPQPQ PPPFARFFRY PQYAWLHATP AREDAVVAVG AGAEEKAEAS  240
RASAVADVEV GTVVDSHASL RVMAPRRPGQ LLRMVAGMQA LGLAVLHLTV ATAPDATALY  300
TFSLKVEEGC GLATAEDIAV AVHHVLCIID AEASSRAAGP RAV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16469RRNRRR
26572RNRRRRQR
38495RMNHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G197400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278451e-157KJ727845.1 Zea mays clone pUT5889 bHLH transcription factor (bHLH134) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021319605.10.0transcription factor bHLH96-like
TrEMBLA0A1B6PMY00.0A0A1B6PMY0_SORBI; Uncharacterized protein
STRINGSb06g026970.11e-155(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37123678
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.13e-21bHLH family protein