PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G192100.1.p
Common NameSb06g026500, SORBIDRAFT_06g026500
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 444aa    MW: 48418.2 Da    PI: 7.9453
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G192100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.31.3e-1657101147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           r +WT++E++l+++a +q+G   W++I +++g  +t+ q++s+ qk+
  Sobic.006G192100.1.p  57 REKWTEDEHKLFLEALQQHGRA-WRRIQEHIG-SKTAVQIRSHAQKF 101
                           789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.21E-1551104IPR009057Homeodomain-like
PROSITE profilePS5129420.13652106IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-954107IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-1555104IPR006447Myb domain, plants
SMARTSM007173.5E-1356104IPR001005SANT/Myb domain
PfamPF002494.2E-1457100IPR001005SANT/Myb domain
CDDcd001673.32E-1059102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MARFQARNDQ SPAADHVGHG NFMDHHLKNT LNCGELDLPG GARAPKARKP YTISKQREKW  60
TEDEHKLFLE ALQQHGRAWR RIQEHIGSKT AVQIRSHAQK FFSKVIRESS GDSNSIAAPP  120
QIQIPPPRPK RRPTHPYPRK LGNSVGKGAS AIKQLQKPLL QTQSLSEQEN CSPKSVLSTA  180
QIDSDTLQTE GSGSPASSVY MEDKCLTPST SVALSKDATT SNDVACEIPE GPVLRLFGKR  240
VVVNNLDQQP SSNTGSLQHV ADMELDASAE TPTGGTGELP SHVAEEAKTW CPWLTGTQQI  300
MYYLPQGEVF SMHSACQFLN YGNGSISYVV LNQQTVASNK QQNQPSQVPH SKVTRAEGSW  360
TESITTSSSV AETTQNSDSI ESTKVNNDED KVVPVPGSRK CASTVPACLR GFVPYKKCTA  420
QSKMLQPEAT GEEADREMTR LCL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.67420.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G192100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9766610.0EU976661.1 Zea mays clone 986506 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448396.10.0uncharacterized protein LOC8060442
TrEMBLC5YEK40.0C5YEK4_SORBI; Uncharacterized protein
STRINGSb06g026500.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27223686
Representative plantOGRP12551549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.12e-33MYB_related family protein