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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.006G190800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bZIP | ||||||||
Protein Properties | Length: 166aa MW: 18327.2 Da PI: 10.3653 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 51.6 | 2e-16 | 72 | 128 | 5 | 61 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L+++N++L+k+ ++ +++ k+ Sobic.006G190800.1.p 72 RRQRRMIKNRESAARSRARKQAYTMELEAEVQKLKEQNEELQKKHVYTNNAIDNYKQ 128 79****************************************998777777777666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.0E-16 | 68 | 132 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.22 | 70 | 115 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 6.88E-13 | 72 | 130 | No hit | No description |
Pfam | PF00170 | 2.7E-14 | 72 | 128 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 8.2E-17 | 72 | 132 | No hit | No description |
CDD | cd14707 | 3.11E-23 | 72 | 117 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 75 | 90 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MAMGNGLMPG VPGMAGGAVT VVSPVDTSVA QLDSMGKGNG DLSSPMAPVP YPFEGVIRGR 60 RSGACVEKVV ERRQRRMIKN RESAARSRAR KQAYTMELEA EVQKLKEQNE ELQKKHVYTN 120 NAIDNYKQLV LANYQRQILN LSLFLVPSLS MTMRKITTVN ESERL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.21427 | 2e-34 | shoot |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, leaves and embryos. {ECO:0000269|PubMed:10611387}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that mediates abscisic acid (ABA) signaling. Binds specifically to the ABA-responsive element (ABRE) of the EMP1 and RAB16A gene promoters. {ECO:0000269|PubMed:10611387}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.006G190800.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA). {ECO:0000269|PubMed:10611387}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT039652 | 1e-142 | BT039652.1 Zea mays full-length cDNA clone ZM_BFc0037E11 mRNA, complete cds. | |||
GenBank | EU964768 | 1e-142 | EU964768.1 Zea mays clone 281458 bZIP transcription factor ABI5 mRNA, complete cds. | |||
GenBank | KJ726943 | 1e-142 | KJ726943.1 Zea mays clone pUT3489 bZIP transcription factor (bZIP68) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021319491.1 | 2e-78 | bZIP transcription factor TRAB1 | ||||
Swissprot | Q6ZDF3 | 3e-53 | TRAB1_ORYSJ; bZIP transcription factor TRAB1 | ||||
TrEMBL | A0A1B6PMT3 | 1e-117 | A0A1B6PMT3_SORBI; Uncharacterized protein | ||||
STRING | Sb06g026410.1 | 8e-78 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP706 | 38 | 147 | Representative plant | OGRP3984 | 10 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G45249.1 | 1e-28 | abscisic acid responsive elements-binding factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.006G190800.1.p |
Publications ? help Back to Top | |||
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