PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.006G184800.1.p | ||||||||
Common Name | Sb06g025900, SORBIDRAFT_06g025900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | ERF | ||||||||
Protein Properties | Length: 228aa MW: 24586.4 Da PI: 5.6286 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.6 | 1.3e-17 | 56 | 106 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + ykGVr + grWv+e+r+p g r+r++lg+f tae+Aa+a++ a+++l+g Sobic.006G184800.1.p 56 PVYKGVRSRN-PGRWVCEVREP--HG-RQRIWLGTFETAEMAARAHDVAALALRG 106 68****9666.9******9996..33.5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.5E-12 | 56 | 106 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.3E-30 | 57 | 116 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.483 | 57 | 114 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-27 | 57 | 120 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-20 | 57 | 115 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.48E-19 | 58 | 116 | No hit | No description |
PRINTS | PR00367 | 5.9E-8 | 58 | 69 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.9E-8 | 80 | 96 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MDWAYYGISG YSTTPSPPPV GVGGGVGDED EAYMTVSSAP PKRRAGRTKF KETRHPVYKG 60 VRSRNPGRWV CEVREPHGRQ RIWLGTFETA EMAARAHDVA ALALRGRAAC LNFADSPRRL 120 RVPAQGAGHD EIRRAAVEAA ELFRPPQQQQ HNVGGSEAAA AAVAAPCAQG SGGGGIGGDF 180 AYYPMDDGLE FEMHGYLDMA QGMLVDPPQA TAWIEDEYEC EVSLWSY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-13 | 55 | 113 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00002 | PBM | Transfer from 475045 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.006G184800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU956044 | 0.0 | EU956044.1 Zea mays clone 1556129 dehydration-responsive element-binding protein 1D mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002446960.1 | 1e-167 | dehydration-responsive element-binding protein 1E | ||||
Swissprot | A2XWL6 | 7e-99 | DRE1E_ORYSI; Dehydration-responsive element-binding protein 1E | ||||
Swissprot | Q8H273 | 7e-99 | DRE1E_ORYSJ; Dehydration-responsive element-binding protein 1E | ||||
TrEMBL | C5YE48 | 1e-166 | C5YE48_SORBI; Uncharacterized protein | ||||
STRING | Sb06g025900.1 | 1e-166 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51990.1 | 3e-40 | C-repeat-binding factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.006G184800.1.p |
Entrez Gene | 8060409 |
Publications ? help Back to Top | |||
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