PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G183200.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family HD-ZIP
Protein Properties Length: 575aa    MW: 61865.5 Da    PI: 7.6046
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G183200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.12e-20103158156
                           TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           +r+  ++t++q+ +Le++F++ ++p++++r+eL+k+lgL+ rqVk+WFqNrR+  k
  Sobic.006G183200.2.p 103 KRRYNRHTPHQIARLEAMFKEFPHPDEKQRAELSKQLGLEPRQVKFWFQNRRTNAK 158
                           677889**********************************************9888 PP
2START121.41.2e-383155052169
                           HHHHHHHHHHHHHHHC-TT-EEEE........EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHH.HHHHHHCCCGGCT-TT- CS
                 START   2 laeeaaqelvkkalaeepgWvkss........esengdevlqkfeeskv.....dsgealrasgvvdmvla.llveellddkeqWdetl 76 
                           la +a++elvk+a+ +ep+W  s+        e +n +e+l+ f++  +     + +ea+r+sg+v+ ++   lve ++d + +W+ ++
  Sobic.006G183200.2.p 315 LAVSAMNELVKMAQTNEPLWIPSAsspgsptmETLNFKEYLKAFTPCVGvkrngFVSEASRESGIVTVDSSaALVEAFMDER-RWSDMF 402
                           7889*****************999999*99999999********98655899999***********9987758999999999.****** PP

                           S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEE CS
                 START  77 a....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgili 154
                                ka+t+e is+g      gal lm+aelq+lsplvp R+++f+R+++ql +  w++vdvS+d  q+    +   ++++lpSg+++
  Sobic.006G183200.2.p 403 ScivaKAATIEEISPGvagsrnGALLLMQAELQVLSPLVPiREVTFLRFCKQLAESAWAVVDVSIDGLQMDHCLATNTKCRRLPSGCVL 491
                           **********************************************************************98899************** PP

                           EEECTCEEEEEEEE- CS
                 START 155 epksnghskvtwveh 169
                           ++++ng +k++  ++
  Sobic.006G183200.2.p 492 QDTPNG-CKLHAHCR 505
                           ******.**987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-2290154IPR009057Homeodomain-like
SuperFamilySSF466894.14E-2091160IPR009057Homeodomain-like
PROSITE profilePS5007118.447100160IPR001356Homeobox domain
SMARTSM003892.6E-20101164IPR001356Homeobox domain
CDDcd000864.79E-20101161No hitNo description
PfamPF000466.6E-18103158IPR001356Homeobox domain
PRINTSPR000314.6E-5131140IPR000047Helix-turn-helix motif
PROSITE patternPS000270135158IPR017970Homeobox, conserved site
PRINTSPR000314.6E-5140156IPR000047Helix-turn-helix motif
PROSITE profilePS5084831.611305500IPR002913START domain
SuperFamilySSF559613.11E-21307503No hitNo description
CDDcd088751.97E-79309501No hitNo description
SMARTSM002342.8E-25314536IPR002913START domain
PfamPF018527.4E-31315505IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MSFGDLLDGG GSAAGVQFPY GVFASSPALS LAVVDAGRRR DGGSAARAGS SARRGGGGNG  60
KDASEAENEG QSMVSGHLDV VLSGGGDGED DEDGEDANPR KRKRRYNRHT PHQIARLEAM  120
FKEFPHPDEK QRAELSKQLG LEPRQVKFWF QNRRTNAKNQ MERQENARLK QENDKLRVEN  180
LSIREAMRDL VCSGCGGPAV LGDLSLEERH LRLENARLRD ELARVCTLTA KFIGKPMSHM  240
ELLAVAEEPH PMPGSSLELA VAGGVGSGVP SSKMPVSTIS ELAGSTSSAM GTVITPMVTA  300
SLPMVSIDKS KFAQLAVSAM NELVKMAQTN EPLWIPSASS PGSPTMETLN FKEYLKAFTP  360
CVGVKRNGFV SEASRESGIV TVDSSAALVE AFMDERRWSD MFSCIVAKAA TIEEISPGVA  420
GSRNGALLLM QAELQVLSPL VPIREVTFLR FCKQLAESAW AVVDVSIDGL QMDHCLATNT  480
KCRRLPSGCV LQDTPNGCKL HAHCRSHGLS MLNILRHPCT SSTSLFCALV SPLVQGGGLQ  540
HCNASVSVWP SSCHRLQCQS MTQKRFLWKE NGAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199104RKRKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G183200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2509840.0AJ250984.1 Zea mays mRNA for OCL2 protein (ocl2 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021317935.10.0homeobox-leucine zipper protein ROC4
SwissprotQ7Y0V90.0ROC4_ORYSJ; Homeobox-leucine zipper protein ROC4
TrEMBLA0A1Z5RFG40.0A0A1Z5RFG4_SORBI; Uncharacterized protein
STRINGSb06g025750.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.11e-132homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wei J, et al.
    GL2-type homeobox gene Roc4 in rice promotes flowering time preferentially under long days by repressing Ghd7.
    Plant Sci., 2016. 252: p. 133-143
    [PMID:27717449]
  3. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]