PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G182800.1.p
Common NameSb06g025710, SORBIDRAFT_06g025710
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family HSF
Protein Properties Length: 307aa    MW: 32539.7 Da    PI: 5.1791
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G182800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.13.8e-35111022102
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl+k+y ++ed++++e+isw+++g++fvv+ + efa+++Lpk+Fkhsnf+SFvRQLn+YgFkkv  ++         weF+++ F++g+
  Sobic.006G182800.1.p  11 FLTKTYAMVEDPTTDETISWNDTGTAFVVWRPAEFARDLLPKHFKHSNFSSFVRQLNTYGFKKVVADR---------WEFANDGFRRGE 90 
                           9****************************************************************999.........************ PP

                           XXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkks 102
                           k+ll  i+r+k 
  Sobic.006G182800.1.p  91 KHLLGGIQRRKG 102
                           *********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.9E-377100IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.36E-337100IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.5E-557100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-191134IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.8E-3111100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-194961IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405074IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-196274IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1708.0E-4147176No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MASPAAGTPP FLTKTYAMVE DPTTDETISW NDTGTAFVVW RPAEFARDLL PKHFKHSNFS  60
SFVRQLNTYG FKKVVADRWE FANDGFRRGE KHLLGGIQRR KGTGAVAAVP TPGIPTGIPI  120
SSPPTSSGGE PAVSSSPPRG STAGVSGAVA ELEEENARLR RENARLAREL ARARRLCDGV  180
RHLVARYDQG RGGDEDLADG DEGHGGGGER PSGPGVKPML FGVPIGAKRL RGADGDGDDV  240
DDGEDGAAEE NGEGNDEEQD EDEERHAARE RGVKAARRNE TSDLDVLTLS VRAAAAARTG  300
GGSRDR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-25110011120Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G182800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9708620.0EU970862.1 Zea mays clone 352519 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002446950.10.0heat stress transcription factor B-2a
SwissprotQ7XRX31e-119HFB2A_ORYSJ; Heat stress transcription factor B-2a
TrEMBLC5YE300.0C5YE30_SORBI; Uncharacterized protein
STRINGSb06g025710.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.14e-49HSF family protein
Publications ? help Back to Top
  1. Nakayama A, et al.
    Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice.
    BMC Plant Biol., 2013. 13: p. 150
    [PMID:24093634]