PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G171500.2.p
Common NameSb06g024680, SORBIDRAFT_06g024680
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 580aa    MW: 61154.2 Da    PI: 5.6639
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G171500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00024108124319
                           ETTTTEEESSHHHHHHH CS
               zf-C2H2   3 CpdCgksFsrksnLkrH 19 
                           C++Cgk F++++++ +H
  Sobic.006G171500.2.p 108 CKNCGKEFTSWELFLQH 124
                           ****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.23E-52753No hitNo description
SMARTSM003550.963052IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.643057IPR007087Zinc finger, C2H2
PfamPF139120.00213152IPR007087Zinc finger, C2H2
PROSITE patternPS0002803252IPR007087Zinc finger, C2H2
SuperFamilySSF576676.8E-8274297No hitNo description
PfamPF139121.4E-9274299IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.221275302IPR007087Zinc finger, C2H2
SMARTSM003550.13275297IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280277297IPR007087Zinc finger, C2H2
SuperFamilySSF576676.8E-8397424No hitNo description
SMARTSM003553.7402424IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.182402424IPR007087Zinc finger, C2H2
PfamPF139124.9E-11402425IPR007087Zinc finger, C2H2
PROSITE patternPS000280404424IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MCESLSSLMP PSPSPPQPSR PPGQSPEYKH FCRVCNKGFT CGSALGGHMR AHGASDVDGF  60
GADDDLLGDE ASTRCLAADQ WDTVGTSATH AYALRANPNR LIRSCQLCKN CGKEFTSWEL  120
FLQHGKCNSE DEEEEEEVDG LGSLRSPSPP SDADSEEDPT VAAAWSKGKR SRRVRAEETS  180
TVAPPERCTL GEEEDLANCL VMLSSYKSNS KQQTTITATD HHEPACASTK KGDGEPPLQV  240
QPISFFTQTQ ESVMALPSPV AMVPQYISPA SRGVFECKAC KKVFTSHQAL GGHRASHKKV  300
KGCFAAKFES NASEPTRHST VIDTNNGNGT SNGKATAVDE GNAGASTDAT RVFATTGVEA  360
NVGMSTEATS SLSMALLPIG HNPSAATTLA VAAQCKKNAK MHECSVCHRL FTSGQALGGH  420
KRCHWLTSNT SDPCNPVANV IPPLTEDLVG VVKHQLSLRP MVDAPEPVLD LTIAANPVAL  480
AASTARPEAT NSSFRLDVAP VHLPPLVVAV PGNVSHQKKD VATSSHATDA VAEEDEADST  540
TAKRAKISDL KDMVSMDGEP MEPWLQVGIG SSSAAGDDS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.60820.0pollen
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G171500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002446909.10.0uncharacterized protein LOC8083374
TrEMBLC5YDI30.0C5YDI3_SORBI; Uncharacterized protein
STRINGSb06g024680.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35243262
Representative plantOGRP2521820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.12e-16C2H2 family protein