PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.006G171000.1.p | ||||||||
Common Name | Sb06g024630, SORBIDRAFT_06g024630 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | SBP | ||||||||
Protein Properties | Length: 419aa MW: 42661.5 Da PI: 9.5119 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.2 | 7.6e-41 | 139 | 215 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +CqvegC++ l++ak+yhrrhkvCe+hskap v+v g eqrfCqqCsrfh++sefDe+krsCrrrLa+hnerrrk++ Sobic.006G171000.1.p 139 RCQVEGCHVALADAKDYHRRHKVCEAHSKAPRVVVLGAEQRFCQQCSRFHAISEFDEAKRSCRRRLAGHNERRRKSN 215 6**************************************************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 5.4E-35 | 135 | 201 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.676 | 137 | 214 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.7E-38 | 138 | 217 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 5.9E-32 | 140 | 213 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 419 aa Download sequence Send to blast |
MEGNGGAGGG SGSAAPPWDL AMHWAPSAGS SYPQQPLALR PGGVPSSQLQ LLHQQQQQQQ 60 QELTCLKLGK RPACCWAGAA LGSQVVAAQA GAGLPHHLHG NGGGAAAGCG GGASGKAAEG 120 KRKEKQAAAA APGAAAVPRC QVEGCHVALA DAKDYHRRHK VCEAHSKAPR VVVLGAEQRF 180 CQQCSRFHAI SEFDEAKRSC RRRLAGHNER RRKSNASEAM ARGAAHPHGV TAFGHGFLPP 240 CGGLSGSSAG ALSLLSSARS GATSAAPWQV TTSDISARSS AALDDLIAEN RAALLAWQYF 300 SDRSSSAPGR HFASSSSTAT GCALPPADDQ HAAASWRPHP HSGVGGGRHH MAPPGVWHTT 360 LDLMQTASSA APATSTGAPF RPVPERAGAR PRGKSKDGDD ASGCSLDAWA PAGGARVL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 9e-32 | 131 | 213 | 2 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young panicles. {ECO:0000269|PubMed:16861571}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.006G171000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT054654 | 1e-150 | BT054654.2 Zea mays full-length cDNA clone ZM_BFb0036O05 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002446904.1 | 0.0 | squamosa promoter-binding-like protein 7 | ||||
Swissprot | Q01JD1 | 1e-108 | SPL7_ORYSI; Squamosa promoter-binding-like protein 7 | ||||
TrEMBL | C5YDH8 | 0.0 | C5YDH8_SORBI; Uncharacterized protein | ||||
STRING | Sb06g024630.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10303 | 34 | 39 | Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27370.4 | 2e-35 | squamosa promoter binding protein-like 10 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.006G171000.1.p |
Entrez Gene | 8055967 |