PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.006G166300.2.p

Common Name

Sb06g024220, SORBIDRAFT_06g024220

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

WRKY

Protein Properties

Length: 253aa MW: 27302.9 Da PI: 8.1801

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.006G166300.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102	3.5e-32	172	230	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk+s +prsYYrCt+++C+vkk+ver +ed ++v++tYeg+H+h+ Sobic.006G166300.2.p 172 LDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRHTHS 230 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.5E-33	157	230	IPR003657	WRKY domain
SuperFamily	SSF118290	1.57E-28	164	230	IPR003657	WRKY domain
PROSITE profile	PS50811	28.92	167	229	IPR003657	WRKY domain
SMART	SM00774	7.7E-38	172	231	IPR003657	WRKY domain
Pfam	PF03106	3.6E-25	173	229	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MHACMEGSSQ LLETCLPASS LYALSPHHPL LAPLPNQHKL LQMPLVQEQA AANNHGVMLY 60 SDHHHHGGGL LYPLLLPGIP FCPFSAAADA ATCDKTTTTG GFAALDAGEA GTSVAKAAGE 120 IASTTTTCNG PSSCNWWKGP AAAGEKGGRM KVRRKMREPR FCFQTRSDVD VLDDGYKWRK 180 YGQKVVKNSL HPRSYYRCTH SNCRVKKRVE RLSEDCRMVI TTYEGRHTHS PCSDDADAAA 240 GDHTGSCAFT SL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-24	163	229	8	74	Probable WRKY transcription factor 4
2lex_A	1e-24	163	229	8	74	Probable WRKY transcription factor 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	147	155	GRMKVRRKM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.006G166300.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT067982	0.0	BT067982.1 Zea mays full-length cDNA clone ZM_BFb0009G22 mRNA, complete cds.
GenBank	EU972805	0.0	EU972805.1 Zea mays clone 388369 WRKY36 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002448267.2	0.0	probable WRKY transcription factor 57 isoform X2
TrEMBL	A0A1B6PMD4	0.0	A0A1B6PMD4_SORBI; Uncharacterized protein
STRING	Sb06g024220.1	0.0	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44745.1	1e-51	WRKY family protein

Link Out ? help Back to Top
Phytozome	Sobic.006G166300.2.p
Entrez Gene	8055943