PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.006G163600.3.p | ||||||||
Common Name | Sb06g023980, SORBIDRAFT_06g023980 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | Trihelix | ||||||||
Protein Properties | Length: 748aa MW: 80402 Da PI: 6.1463 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 97.5 | 1.2e-30 | 82 | 166 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+++e++aLi++r+em+ ++r++ lk+plWe+vs+k+++ g++rs+k+Ckek+en++k+yk++keg+ +r++++s +++fd+lea Sobic.006G163600.3.p 82 RWPREETQALIRIRSEMDATFRDATLKGPLWEDVSRKLADLGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YRFFDELEA 166 8*********************************************************************866665..******985 PP | |||||||
2 | trihelix | 107.6 | 8.3e-34 | 490 | 575 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r +++ r++++ k+plWe++s+ mr+ g++rs+k+Ckekwen+nk+ykk+ke++kkr +e+s+tcpyf+qlea Sobic.006G163600.3.p 490 RWPKTEVHALIQLRMDLDMRYQETGPKGPLWEDISSGMRRLGYNRSSKRCKEKWENINKYYKKVKESNKKR-PEDSKTCPYFHQLEA 575 8*********************************************************************8.99***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.538 | 75 | 139 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.9E-4 | 79 | 141 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.3E-4 | 80 | 139 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 6.1E-22 | 81 | 167 | No hit | No description |
CDD | cd12203 | 1.44E-28 | 81 | 146 | No hit | No description |
SMART | SM00717 | 0.0019 | 487 | 549 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 7.236 | 489 | 547 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 2.4E-23 | 489 | 576 | No hit | No description |
CDD | cd12203 | 1.39E-28 | 490 | 554 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 748 aa Download sequence Send to blast |
MGPFSPTAGA TGGPMPLSSR PPSSAQPQPQ PQPQPQQPRS SYDELAVVSG TAGAGGFDDE 60 MMGSGGGGGG GGGGSSGASS NRWPREETQA LIRIRSEMDA TFRDATLKGP LWEDVSRKLA 120 DLGYKRSAKK CKEKFENVHK YYKRTKEGRA GRQDGKSYRF FDELEALHAA APQPQPQPQP 180 PQMQQQQLPP ATTAPAPLHA FAAPPPMSSM PPPTGPMQPA PISSAAPAVV QVHQAPVELP 240 PAAHQPLNLQ GFSFSSMSDS ESDDESEDDD MTAETGGSQD RLGKRKRGDG GGASGSSKKM 300 MTFFEGLMQQ VVDRQEEMQR RFLETMEKRE AERTAREEAW RRQEVARLNR EQEQLAQERA 360 AAASRDAAII AFLQRIGGQS VQPATAVVVP MPAPVPVHTP PPPKQQSRQQ QPPPPPSPQA 420 TPQSKPISAA PLQQQPPQKQ PKDTSSQQDA GTPRSAPPTS GASLELVPVA EHHVDSGLGG 480 GDGGAASSSR WPKTEVHALI QLRMDLDMRY QETGPKGPLW EDISSGMRRL GYNRSSKRCK 540 EKWENINKYY KKVKESNKKR PEDSKTCPYF HQLEAIYSRK HLRAAAASSN AAAAAVAPPP 600 AYPDQLNPSR HEIEGKNIND DKRNNGGSGG GTQVPSSNGE TTAPTTTPAA FDADTGMKKP 660 EDIVRELNEQ PPREFTTEDE TDSDDMGDEY TDDGEEGEDD GKMQYRIQFQ RPNPGGTNTA 720 PAPAAATTAA PAVPTSAPTS TFLAMVQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 63 | 74 | SGGGGGGGGGGS |
2 | 124 | 132 | KRSAKKCKE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.006G163600.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT055033 | 0.0 | BT055033.1 Zea mays full-length cDNA clone ZM_BFc0059A16 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002448251.2 | 0.0 | trihelix transcription factor GT-2 isoform X1 | ||||
Swissprot | Q39117 | 1e-72 | TGT2_ARATH; Trihelix transcription factor GT-2 | ||||
TrEMBL | A0A1Z5RF21 | 0.0 | A0A1Z5RF21_SORBI; Uncharacterized protein | ||||
STRING | Sb06g023980.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP606 | 38 | 175 |
Representative plant | OGRP16962 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33240.1 | 1e-40 | GT-2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.006G163600.3.p |
Entrez Gene | 8055927 |