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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.006G154000.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
TCP |
Protein Properties |
Length: 208aa MW: 21339.2 Da PI: 10.3162 |
Description |
TCP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.006G154000.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | TCP | 107.7 | 1.8e-33 | 51 | 146 | 9 | 89 |
TCP 9 skihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.seceaesssssasnsssg........ 88
+++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl qa+p+i ++tg+++++a +c+++ s s+++ +
Sobic.006G154000.1.p 51 KDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLHQAEPSILAATGSGTTPAvFSCSSAPSTSAGAG---Asltllgkr 136
8********************************************************99999444533333333222...122344433 PP
TCP 89 .........k 89
+
Sobic.006G154000.1.p 137 preehepapA 146
3333333332 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 208 aa
Download sequence Send
to blast |
MASRDGAATF QVYRPMPAPS PAPPPMSLSA AAADAAAPAP KKAKSPGGAC KDRHSKVNGR 60 GRRVRMPIVC AARVFQLTRE LGLKSDGQTI EWLLHQAEPS ILAATGSGTT PAVFSCSSAP 120 STSAGAGASL TLLGKRPREE HEPAPAPAPF WVTPTLQARP VAASWGLSPA QEAAAQAYAS 180 VAAQGHHHLN LLSVLSGATR PSEEESR*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ727696 | 1e-148 | KJ727696.1 Zea mays clone pUT5635 TCP transcription factor (TCP14) gene, partial cds. |