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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.006G115700.2.p |
Common Name | Sb06g019710, SORBIDRAFT_06g019710 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
WRKY |
Protein Properties |
Length: 741aa MW: 78241 Da PI: 7.2622 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.006G115700.2.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 97.3 | 1e-30 | 284 | 341 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60
+Dgy+WrKYGqK+vk se+prsY++Ct+++C+vkkkvers+ +++++ei+Y+g Hnh+k
Sobic.006G115700.2.p 284 EDGYSWRKYGQKQVKHSEYPRSYFKCTHPNCQVKKKVERSH-EGHITEIIYKGAHNHPK 341
8****************************************.***************85 PP
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2 | WRKY | 104.6 | 5.3e-33 | 507 | 565 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++d k v++tYeg+Hnhe
Sobic.006G115700.2.p 507 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCTVRKHVERASHDLKSVITTYEGKHNHE 565
59********************************************************8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009555 | Biological Process | pollen development |
GO:0009942 | Biological Process | longitudinal axis specification |
GO:0030010 | Biological Process | establishment of cell polarity |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 741 aa
Download sequence Send
to blast |
MEGHVAMEWK DPKPGPESLM GFQTRGVRPD TVGGHSNEDA KPGFEKHGFS VDISSPQEEG 60 RSLPLTPQFG QKTSPGSSLA ERMQARAGFK VPKLNMPFST AAGADNSVPG APSPYLTIPP 120 GLSPATLLES PVFVSNAMGQ PSPTTGKLFM SGSTNDNDPI RFGGPPVGDG PDAFSFKPLD 180 LKSSHYTAEA MKEQNTQVSV KTKTKTQPVQ EANLLGQLNQ QNHNVQTNMN IGGPHDSKLS 240 RLASGTGACN EHVSPPDYGQ TAEEGGDARE DYPPAMAAAT APAEDGYSWR KYGQKQVKHS 300 EYPRSYFKCT HPNCQVKKKV ERSHEGHITE IIYKGAHNHP KPTPSRRPGV QVQPVHPFGD 360 AGGAQQADAA ADNNLGSQSQ QANAAAEANH QPWRAGVQDG MDAATSSPSV PGELCDSSAS 420 MQQVEYAPRG FGSPEGADVT SAPSDEVDGG DRVTLGSMSH AGADAEGDEL ESKRRKVEAY 480 AMDMSTASRA IREPRVVIQT TSEVDILDDG YRWRKYGQKV VKGNPNPRSY YKCTHPGCTV 540 RKHVERASHD LKSVITTYEG KHNHEVPAAR NSGGHPSTAA AATGAGGGGP RRPEHTSSVH 600 DGLMMRHLGG CGVPFGLPLQ PPSRDPLAPM GNYPTYPFTA LGGGGGSGGD GGLTSLPSLP 660 MATGNLSAVE GLKLPMLATS SPLHHQHPLL RHRQAMQAAA LAAAPMAQVK VEDNVAAGVT 720 AAPSVYQQMV RSGLRLGHQM *
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Low expression in senescent leaves (PubMed:11722756). Expressed in both the unfertilized egg cell and the pollen tube (PubMed:21316593). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:21316593}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ727736 | 0.0 | KJ727736.1 Zea mays clone pUT5677 WRKY transcription factor (WRKY59) mRNA, partial cds. |