PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G086000.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 165aa    MW: 18082.3 Da    PI: 7.2646
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G086000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.66.4e-33101291128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                           lppGf+F P+deelvv++L++k++  +++  +++++v +++++Pw+L+ k+ +  ++wyfFs++++        +r+t +gyW++   d
  Sobic.006G086000.2.p  10 LPPGFHFFPSDEELVVHFLRRKASLLPCQP-DIVPTVCMNHYDPWELNGKALGAGNQWYFFSHAKH--------SRVTPNGYWSSVCAD 89 
                           79*************************999.89**************977677889******9754........799************ PP

                   NAM  90 kevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128
                           ++v s +g  vglkktLvf +g  ++++g++t+W+mhey+l
  Sobic.006G086000.2.p  90 ETVSS-GGCSVGLKKTLVFSTGepSESEGTETNWIMHEYHL 129
                           ***99.99************8755788999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.89E-406133IPR003441NAC domain
PROSITE profilePS5100535.31410153IPR003441NAC domain
PfamPF023651.1E-2211129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MGGASNSNLL PPGFHFFPSD EELVVHFLRR KASLLPCQPD IVPTVCMNHY DPWELNGKAL  60
GAGNQWYFFS HAKHSRVTPN GYWSSVCADE TVSSGGCSVG LKKTLVFSTG EPSESEGTET  120
NWIMHEYHLL DGRKGISSST TSTNSSSKKL HHPNTVRATC IYMF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-311013117144NO APICAL MERISTEM PROTEIN
1ut4_B2e-311013117144NO APICAL MERISTEM PROTEIN
1ut7_A2e-311013117144NO APICAL MERISTEM PROTEIN
1ut7_B2e-311013117144NO APICAL MERISTEM PROTEIN
3swm_A2e-311013120147NAC domain-containing protein 19
3swm_B2e-311013120147NAC domain-containing protein 19
3swm_C2e-311013120147NAC domain-containing protein 19
3swm_D2e-311013120147NAC domain-containing protein 19
3swp_A2e-311013120147NAC domain-containing protein 19
3swp_B2e-311013120147NAC domain-containing protein 19
3swp_C2e-311013120147NAC domain-containing protein 19
3swp_D2e-311013120147NAC domain-containing protein 19
4dul_A2e-311013117144NAC domain-containing protein 19
4dul_B2e-311013117144NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.72430.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269|PubMed:15923329, ECO:0000269|PubMed:18069942}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G086000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021318322.11e-112NAC domain-containing protein 104-like
SwissprotQ8GWK63e-46NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A1B6PL301e-119A0A1B6PL30_SORBI; Uncharacterized protein
STRINGSb06g017190.11e-112(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.19e-45xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]