PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G080500.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 647aa    MW: 65448.9 Da    PI: 9.2325
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G080500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH376.2e-12371416655
                           HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              Er RR+++++ f++L  llP +   p  K +Ka+i+ +Av YIksL+
  Sobic.006G080500.1.p 371 IFTERERRKKMKNMFSTLHALLPDL---P-DKADKATIVGEAVTYIKSLE 416
                           557*********************7...3.9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.764365415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-14368430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-14370430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.13E-12370420No hitNo description
SMARTSM003533.1E-9371421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-9373416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MSQEGANLPQ EVEGSHDQAT APHGSIPANA GSPTATVMSA GSNPSSVSKL ASAVNNAGLS  60
ERASPAVLSA GEDSNAASSK IASPAVLQAG EDSSAASKIS SPAVLLAGEE NKVELKLASP  120
TVLLAGEEKG NDAAGSKLAS PAMLHDYDNS KAGSHAGVDN NAARSEVASP AVLHAGDGNN  180
GGSKIASPAV PQAIVENPTG SKLDSPAVLH ADEHNNAGFK VPNPAVLHAS KDMDNNTERP  240
KFGSSLLLHA GKDNKARTKL AIQAMSHASG NAGSSRLTRS AAAALHAAKS NASNLAIQVA  300
PRHHAGKDNI AGSSKAARPA AVGAGAGESN AKEGKNNIAR GQQRALEADV GGGSGKGNAA  360
ALEDTDHDLH IFTERERRKK MKNMFSTLHA LLPDLPDKAD KATIVGEAVT YIKSLEGTVE  420
KLEKMKLQRK RALAAQQQLQ QHGQQLLVGA GSGSSRASSA RHPAPALPAP AAPAPAPAAS  480
SSREASLADM VHSLEVQQAS VAAANRALAV AAAAAAAGGS GSGSSSGAAA ANALSLPRGA  540
VPFPAPATGF QTWSGQNVVV SVANNEAYIN LHCPREPGTL TKVLFVLERH SIEVVTTTIS  600
AHDGFRMYGI HARANPASAS ARFPQNLGAE DRFKLAVSEI VQLINI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G080500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002446487.20.0uncharacterized protein LOC8073998
TrEMBLA0A1B6PKW60.0A0A1B6PKW6_SORBI; Uncharacterized protein
STRINGSb06g016740.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Representative plantOGRP12261548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.11e-24bHLH family protein