PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G076900.7.p
Common NameSb06g016380, SORBIDRAFT_06g016380
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 541aa    MW: 59209.3 Da    PI: 5.963
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G076900.7.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-12346393355
                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           ++h + Er+RR+++N+ f  L+ l+P+      +K++K++iL +++ Y+k+Lq
  Sobic.006G076900.7.p 346 KNHVMSERKRREKLNEMFLILKLLVPSI-----QKVDKVSILAETIAYLKELQ 393
                           5899***********************6.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.7E-391158IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.574343392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.54E-16346397No hitNo description
SuperFamilySSF474592.75E-18346414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.4E-17347408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-10347393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-15349398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MLTWTDGFYN GEVKTRKISN SVKLTADQLV MQRSEQLRQL YEALLSGECD RRAAPARPVG  60
SLSPEDLGDT EWYYVICMTY AFRPGQGLPG RSFASNEHVW LRNAHLADSK AFPRALLAKS  120
ASIQLIVCIP VMGGVLELGT TNRVPEDPGL VSRATAAFWE SQCPTYSEEP SSNPSANEAG  180
ETADIVVFED LGHNAMVETM TATGGHGQEL GEAEGLSNAS LEHMTKEMDE FYSLFEEMDV  240
QPLPLEDSWI MLDGSNNFEV PSPPLGARAT TNNVADTSSA PVDGSRATCF MPWTTRPSRS  300
YSDEAAAVPA VEEPQKLLKK VVSGGRAWAN CGVGGTVRTA QESGIKNHVM SERKRREKLN  360
EMFLILKLLV PSIQKVDKVS ILAETIAYLK ELQRKVQELK SSRELLSRPS ETTARPTKPC  420
GIGSESVRKK LSAGSKRKSP DFSGDVEKEH PWVLPKDGTS NVTVAVSDRD VLLEVQCRWE  480
ELLMTRVFDS IKGLHLDVLS VQASAPDGFM GLKIRAKYAG SSAVVPWMIS EALRKAIGKR  540
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-13115846192Transcription factor MYC3
4rqw_B2e-13115846192Transcription factor MYC3
4rs9_A2e-13115846192Transcription factor MYC3
4yz6_A2e-13115846192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1351356ERKRRE
2352357RKRREK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G076900.7.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF8357220.0KF835722.1 Zea mays cultivar Na Hao colored plant1 (b1) mRNA, b1-B-Peru allele, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021318214.10.0anthocyanin regulatory R-S protein
SwissprotP130270.0ARRS_MAIZE; Anthocyanin regulatory R-S protein
TrEMBLA0A1B6PKU40.0A0A1B6PKU4_SORBI; Uncharacterized protein
STRINGSb06g016380.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.18e-51bHLH family protein
Publications ? help Back to Top
  1. Pattanaik S,Xie CH,Yuan L
    The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength.
    Planta, 2008. 227(3): p. 707-15
    [PMID:18075757]
  2. Huang ZA, et al.
    The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.).
    J Genet Genomics, 2012. 39(3): p. 149-56
    [PMID:22464474]
  3. Perrot GH,Cone KC
    Nucleotide sequence of the maize R-S gene.
    Nucleic Acids Res., 1989. 17(19): p. 8003
    [PMID:2798145]
  4. Li P, et al.
    Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize.
    PLoS ONE, 2018. 13(1): p. e0190670
    [PMID:29304111]