PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.006G076900.5.p

Common Name

Sb06g016380, SORBIDRAFT_06g016380

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bHLH

Protein Properties

Length: 588aa MW: 64424.2 Da PI: 6.1588

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.006G076900.5.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.3	1.2e-12	393	440	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++h + Er+RR+++N+ f L+ l+P+ +K++K++iL +++ Y+k+Lq Sobic.006G076900.5.p 393 KNHVMSERKRREKLNEMFLILKLLVPSI-----QKVDKVSILAETIAYLKELQ 440 5899*********************6.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	8.8E-50	20	205	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	15.574	390	439	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.36E-15	393	444	No hit	No description
SuperFamily	SSF47459	3.01E-18	393	461	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.9E-10	394	440	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.4E-17	394	455	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.1E-15	396	445	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 588 aa Download sequence Send to blast
MALSASLVQQ ELQQPAERQL RNQLAAAARS INWTYALFWS ISSTQPGMLT WTDGFYNGEV 60 KTRKISNSVK LTADQLVMQR SEQLRQLYEA LLSGECDRRA APARPVGSLS PEDLGDTEWY 120 YVICMTYAFR PGQGLPGRSF ASNEHVWLRN AHLADSKAFP RALLAKSASI QLIVCIPVMG 180 GVLELGTTNR VPEDPGLVSR ATAAFWESQC PTYSEEPSSN PSANEAGETA DIVVFEDLGH 240 NAMVETMTAT GGHGQELGEA EGLSNASLEH MTKEMDEFYS LFEEMDVQPL PLEDSWIMLD 300 GSNNFEVPSP PLGARATTNN VADTSSAPVD GSRATCFMPW TTRPSRSYSD EAAAVPAVEE 360 PQKLLKKVVS GGRAWANCGV GGTVRTAQES GIKNHVMSER KRREKLNEMF LILKLLVPSI 420 QKVDKVSILA ETIAYLKELQ RKVQELKSSR ELLSRPSETT ARPTKPCGIG SESVRKKLSA 480 GSKRKSPDFS GDVEKEHPWV LPKDGTSNVT VAVSDRDVLL EVQCRWEELL MTRVFDSIKG 540 LHLDVLSVQA SAPDGFMGLK IRAKYAGSSA VVPWMISEAL RKAIGKR*

Sequence ? help Back to Top

Protein Sequence Length: 588 aa Download sequence Send to blast

MALSASLVQQ ELQQPAERQL RNQLAAAARS INWTYALFWS ISSTQPGMLT WTDGFYNGEV  60
KTRKISNSVK LTADQLVMQR SEQLRQLYEA LLSGECDRRA APARPVGSLS PEDLGDTEWY  120
YVICMTYAFR PGQGLPGRSF ASNEHVWLRN AHLADSKAFP RALLAKSASI QLIVCIPVMG  180
GVLELGTTNR VPEDPGLVSR ATAAFWESQC PTYSEEPSSN PSANEAGETA DIVVFEDLGH  240
NAMVETMTAT GGHGQELGEA EGLSNASLEH MTKEMDEFYS LFEEMDVQPL PLEDSWIMLD  300
GSNNFEVPSP PLGARATTNN VADTSSAPVD GSRATCFMPW TTRPSRSYSD EAAAVPAVEE  360
PQKLLKKVVS GGRAWANCGV GGTVRTAQES GIKNHVMSER KRREKLNEMF LILKLLVPSI  420
QKVDKVSILA ETIAYLKELQ RKVQELKSSR ELLSRPSETT ARPTKPCGIG SESVRKKLSA  480
GSKRKSPDFS GDVEKEHPWV LPKDGTSNVT VAVSDRDVLL EVQCRWEELL MTRVFDSIKG  540
LHLDVLSVQA SAPDGFMGLK IRAKYAGSSA VVPWMISEAL RKAIGKR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5t0f_A	3e-18	14	201	3	188	Transcription factor MYC3
5t0q_A	3e-18	14	201	3	188	Transcription factor MYC3
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	398	403	ERKRRE
2	399	404	RKRREK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.006G076900.5.p

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	X57276	0.0	X57276.1 Z.mays B-Peru gene for a regulatory protein.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021318744.1	0.0	anthocyanin regulatory R-S protein isoform X2
Swissprot	P13027	0.0	ARRS_MAIZE; Anthocyanin regulatory R-S protein
TrEMBL	A0A1B6PKU4	0.0	A0A1B6PKU4_SORBI; Uncharacterized protein
STRING	Sb06g016380.1	0.0	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41315.1	1e-60	bHLH family protein

Link Out ? help Back to Top
Phytozome	Sobic.006G076900.5.p
Entrez Gene	8073018

Publications ? help Back to Top
Pattanaik S,Xie CH,Yuan L The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength. Planta, 2008. 227(3): p. 707-15 [PMID:18075757] Huang ZA, et al. The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.). J Genet Genomics, 2012. 39(3): p. 149-56 [PMID:22464474] Perrot GH,Cone KC Nucleotide sequence of the maize R-S gene. Nucleic Acids Res., 1989. 17(19): p. 8003 [PMID:2798145] Li P, et al. Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize. PLoS ONE, 2018. 13(1): p. e0190670 [PMID:29304111]