PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G076900.4.p
Common NameSb06g016380, SORBIDRAFT_06g016380
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 590aa    MW: 64683.5 Da    PI: 6.3435
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G076900.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-12395442355
                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           ++h + Er+RR+++N+ f  L+ l+P+      +K++K++iL +++ Y+k+Lq
  Sobic.006G076900.4.p 395 KNHVMSERKRREKLNEMFLILKLLVPSI-----QKVDKVSILAETIAYLKELQ 442
                           5899***********************6.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.7E-5020207IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.574392441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-18395463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.47E-15395446No hitNo description
PfamPF000103.9E-10396442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.5E-17396457IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-15398447IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MALSASLVQQ ELQQPAERQL RNQLAAAARS INWTYALFWS ISSTQPGCRM LTWTDGFYNG  60
EVKTRKISNS VKLTADQLVM QRSEQLRQLY EALLSGECDR RAAPARPVGS LSPEDLGDTE  120
WYYVICMTYA FRPGQGLPGR SFASNEHVWL RNAHLADSKA FPRALLAKSA SIQLIVCIPV  180
MGGVLELGTT NRVPEDPGLV SRATAAFWES QCPTYSEEPS SNPSANEAGE TADIVVFEDL  240
GHNAMVETMT ATGGHGQELG EAEGLSNASL EHMTKEMDEF YSLFEEMDVQ PLPLEDSWIM  300
LDGSNNFEVP SPPLGARATT NNVADTSSAP VDGSRATCFM PWTTRPSRSY SDEAAAVPAV  360
EEPQKLLKKV VSGGRAWANC GVGGTVRTAQ ESGIKNHVMS ERKRREKLNE MFLILKLLVP  420
SIQKVDKVSI LAETIAYLKE LQRKVQELKS SRELLSRPSE TTARPTKPCG IGSESVRKKL  480
SAGSKRKSPD FSGDVEKEHP WVLPKDGTSN VTVAVSDRDV LLEVQCRWEE LLMTRVFDSI  540
KGLHLDVLSV QASAPDGFMG LKIRAKYAGS SAVVPWMISE ALRKAIGKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5t0f_A1e-19142033188Transcription factor MYC3
5t0q_A1e-19142033188Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1400405ERKRRE
2401406RKRREK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G076900.4.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX572760.0X57276.1 Z.mays B-Peru gene for a regulatory protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021318744.10.0anthocyanin regulatory R-S protein isoform X2
SwissprotP130270.0ARRS_MAIZE; Anthocyanin regulatory R-S protein
TrEMBLA0A1Z5RCW50.0A0A1Z5RCW5_SORBI; Uncharacterized protein
STRINGSb06g016380.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-58bHLH family protein
Publications ? help Back to Top
  1. Pattanaik S,Xie CH,Yuan L
    The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength.
    Planta, 2008. 227(3): p. 707-15
    [PMID:18075757]
  2. Huang ZA, et al.
    The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.).
    J Genet Genomics, 2012. 39(3): p. 149-56
    [PMID:22464474]
  3. Perrot GH,Cone KC
    Nucleotide sequence of the maize R-S gene.
    Nucleic Acids Res., 1989. 17(19): p. 8003
    [PMID:2798145]
  4. Li P, et al.
    Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize.
    PLoS ONE, 2018. 13(1): p. e0190670
    [PMID:29304111]