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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.006G059800.1.p |
Common Name | Sb06g014800, SORBIDRAFT_06g014800 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
ERF |
Protein Properties |
Length: 287aa MW: 29658.7 Da PI: 4.2561 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.006G059800.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 58.6 | 1.5e-18 | 41 | 92 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
++y GVr+++ +gr++AeIrdp + + r++lg+f+taeeAa a+++a+++l+g+
Sobic.006G059800.1.p 41 TRYLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAEEAAVAYDRAARSLRGA 92
5799******.**********843...4*************************995 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009739 | Biological Process | response to gibberellin |
GO:0010030 | Biological Process | positive regulation of seed germination |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 287 aa
Download sequence Send
to blast |
MNFSSYFFSS SSSSSEKKSS SSSSKQRRQQ QQQAQPDANT TRYLGVRRRP WGRYAAEIRD 60 PATKERHWLG TFDTAEEAAV AYDRAARSLR GARARTNFAY PDLPPGSSIT PYLSPDLTSG 120 DNATQLLQPF YAADPAAASS LQAAAAAPPA ANAGAGYGYG AGAGDDYYAS AYGYNDYSAE 180 DMSALMDDLA IPDDLTAEDA GGSVDMYSGG GGGGSGSANA SSGSGGGGWC DASEFSAYGG 240 ASSAASHGVY FEEGYVHSPL FSPMPAVDDA CADGFQLGGS SSSYYY*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ728275 | 1e-164 | KJ728275.1 Zea mays clone pUT6553 AP2-EREBP transcription factor (EREB125) gene, partial cds. |