PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sobic.006G058400.4.p | ||||||||
Common Name | Sb06g014640, SORBIDRAFT_06g014640 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 339aa MW: 36725.5 Da PI: 5.714 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 81.5 | 1.2e-25 | 22 | 114 | 1 | 83 |
trihelix 1 rWtkqevlaLiearremeerlr.rgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 rWt+qe+l+Lie++r +e++ r rg+ ++ ++W++v++++r++g+ r+p+qC+++w+nl+++ykki+e+e++ +++++ Sobic.006G058400.4.p 22 RWTRQEILVLIEGKRVVERSGRgRGRgrvrgggggdggAEPTKWAAVAEYCRRHGVDRGPVQCRKRWSNLAGDYKKIREWERGYAARKE 110 8**************99999885333556777777887********************************************9754433 PP trihelix 77 stcpyfd 83 + f Sobic.006G058400.4.p 111 ---ASFW 114 ...3444 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 4.5E-11 | 22 | 114 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-5 | 22 | 91 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.4 | 22 | 92 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 339 aa Download sequence Send to blast |
MSNAGGEGSR GVGTGRGSRL PRWTRQEILV LIEGKRVVER SGRGRGRGRV RGGGGGDGGA 60 EPTKWAAVAE YCRRHGVDRG PVQCRKRWSN LAGDYKKIRE WERGYAARKE ASFWAMRNDA 120 RRERRLPGFF DREVYDILEG RGAAAGNAVA AALEDAEEGK EEEEEEEEVE AKAVLRTAGR 180 RGVQGSGLFS SSEDEDDQDD DAATPSPTPT PTPTPAPAAA VAVPIPVTEK TTDVPRQASS 240 EQGTSKEKQP EQITEDSPAQ CGQKRQRSDD NASGRATTNL QGQLVEILDR SSQMVAAQLE 300 AQNINSRLDR EQRKDQVSSL LGVLGKVADA LYRIADKL* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sobic.006G058400.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU949356 | 1e-157 | EU949356.1 Zea mays clone 402974 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002447725.1 | 0.0 | trihelix transcription factor ASR3 isoform X4 | ||||
TrEMBL | C5YF89 | 0.0 | C5YF89_SORBI; Uncharacterized protein | ||||
STRING | Sb06g014640.1 | 0.0 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G33550.1 | 2e-41 | Trihelix family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sobic.006G058400.4.p |
Entrez Gene | 8072029 |