PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.006G051700.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | WRKY | ||||||||
Protein Properties | Length: 1103aa MW: 122342 Da PI: 6.3764 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 80.2 | 2.2e-25 | 142 | 203 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDg+ WrKYGqK++ g+++pr+YYrCt++ gC ++k+++r++ dp +++++Y g+H+++ Sobic.006G051700.2.p 142 LDDGFIWRKYGQKDILGAKHPRGYYRCTHRhmqGCLATKQIQRTDGDPLLLDVVYIGSHTCT 203 58***************************99999**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.0E-26 | 129 | 205 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-24 | 137 | 205 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.068 | 137 | 205 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.8E-39 | 142 | 204 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.1E-24 | 143 | 202 | IPR003657 | WRKY domain |
Gene3D | G3DSA:3.40.50.300 | 1.4E-10 | 297 | 441 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SuperFamily | SSF52540 | 1.18E-37 | 297 | 548 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
CDD | cd00009 | 5.01E-6 | 301 | 439 | No hit | No description |
Pfam | PF00931 | 3.8E-29 | 315 | 575 | IPR002182 | NB-ARC |
PRINTS | PR00364 | 6.8E-9 | 325 | 340 | No hit | No description |
PRINTS | PR00364 | 6.8E-9 | 398 | 412 | No hit | No description |
SuperFamily | SSF52058 | 3.91E-42 | 612 | 833 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:3.80.10.10 | 1.3E-18 | 683 | 823 | IPR032675 | Leucine-rich repeat domain, L domain-like |
PRINTS | PR00364 | 6.8E-9 | 697 | 713 | No hit | No description |
SuperFamily | SSF52058 | 3.91E-42 | 879 | 1089 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:3.80.10.10 | 8.2E-16 | 882 | 1092 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043531 | Molecular Function | ADP binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1103 aa Download sequence Send to blast |
MEGMPEEKCS LAAVAAELAQ IHDMAKQLVE QVADPQQGGG DGDAAAGGGY QRVRELTSTI 60 CANVDKALHM LTSNSLDGSP AAGQPESTPS SGGHGSSRGA VLDSDQAGGG TGNAPGQGKD 120 RKTLSKWSTQ VRVSNAQDAT YLDDGFIWRK YGQKDILGAK HPRGYYRCTH RHMQGCLATK 180 QIQRTDGDPL LLDVVYIGSH TCTQPWGAAA HPNIQSMLPT TEQTTTSGSE SGSVLTSEIP 240 GSMASRKRDT GGETRLSKTM IEEPHSTPYK DVMAWFSMGK LRQKGRLSHT CMQQAGQELL 300 GRDDIRQQVM EKILLDRNGV NNCTVICIYG WSGLGKTSLL HALYNDQQLL DAFDKRIWIQ 360 ISDKIDISML FRKIVEFAMN EHCSITNIDF LRELVVEEIT DKKFLLFLDD ADIVNQQFWT 420 TLLEVLNTGA KGSVVVMATR SSTVAAVRNV ATHSYSLNPL SEENNLMLLQ QYAVVGTDIQ 480 SNPDLALIAN RFISRFRYNL LHLKAIGGLL CHTDTFSVEK DKFEGSVMPL WICHDVLPVH 540 LKRCLALCSL FPEGYIFGKH HMVLLWISHG CVRPVEGYEL EDVGVEYFNE LLCRSFFQCS 600 PVHSDKNEMF VMHELMYKVV ESVSPDKYFK SEDPVISIPE NVFHCSLITS QFQTVELMHR 660 MKQLKHLQTF MVVQPEWKPN NISLPTLNLV GLDDFFLKFT SLETLDLSHT ETEELPASIA 720 GLRNLRYLSV NSTNVRALPC ELCSLSNLQT LEAKHCRFLT ELPRDIKMLV KLRHLDLTKE 780 LGYVDLPHGI GELIELQTLP VFHVSGDSSC CSISELGSLH NLRGCLWLSG LESVKTGSKA 840 KEANLKDKHC LNDLTLQWHD DGIDIEDEGE DSKDVADEQV LEGLKPHVNL QVLTIRGYEG 900 RRFPAWMQGS SPSLPNLVTL TLDNCCNCTE FPTIVQLPSL KSLSVRKMYD VQQLSSHTDT 960 HGNGSTAKFP SLELLNLWEM YGLEELFSKE SEGDCPRLRK VCISRCPDLR RLPSARSLTE 1020 LVLHCGKQLP DISELASLVS LKIEGFHGTK SFGLPAAAAL RKLEIRSCKE LASVDGLSAV 1080 LTTVQRLKIA GCPKLVLPGR NQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j5t_C | 4e-36 | 237 | 922 | 103 | 771 | Disease resistance RPP13-like protein 4 |
6j5t_F | 4e-36 | 237 | 922 | 103 | 771 | Disease resistance RPP13-like protein 4 |
6j5t_G | 4e-36 | 237 | 922 | 103 | 771 | Disease resistance RPP13-like protein 4 |
6j5t_L | 4e-36 | 237 | 922 | 103 | 771 | Disease resistance RPP13-like protein 4 |
6j5t_O | 4e-36 | 237 | 922 | 103 | 771 | Disease resistance RPP13-like protein 4 |
6j5u_A | 4e-36 | 237 | 922 | 103 | 771 | Disease resistance RPP13-like protein 4 |
6j5v_A | 4e-36 | 237 | 922 | 103 | 771 | Disease resistance RPP13-like protein 4 |
6j5w_A | 4e-36 | 237 | 922 | 103 | 771 | Disease resistance RPP13-like protein 4 |
6j6i_C | 4e-36 | 237 | 922 | 103 | 771 | Disease resistance RPP13-like protein 4 |
6j6i_F | 4e-36 | 237 | 922 | 103 | 771 | Disease resistance RPP13-like protein 4 |
6j6i_G | 4e-36 | 237 | 922 | 103 | 771 | Disease resistance RPP13-like protein 4 |
6j6i_L | 4e-36 | 237 | 922 | 103 | 771 | Disease resistance RPP13-like protein 4 |
6j6i_O | 4e-36 | 237 | 922 | 103 | 771 | Disease resistance RPP13-like protein 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.006G051700.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021319590.1 | 0.0 | disease resistance protein RGA2 | ||||
Refseq | XP_021319591.1 | 0.0 | disease resistance protein RGA2 | ||||
Refseq | XP_021319592.1 | 0.0 | disease resistance protein RGA2 | ||||
TrEMBL | A0A1B6PKB6 | 0.0 | A0A1B6PKB6_SORBI; Uncharacterized protein | ||||
STRING | Sb06g013840.1 | 0.0 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.1 | 4e-30 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.006G051700.2.p |