![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sobic.006G050900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 195aa MW: 21023.3 Da PI: 9.8034 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 44.2 | 3.3e-14 | 81 | 171 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sef 90 +l +s+v++ ++v+p++ a + + t+ +++grsWe+++ +++++ l++GW++F+ +ngL gD +vF+l g+ ++ Sobic.006G050900.1.p 81 ILCKSHVNQPFQVVVPRSLAPFLPAT-TVPATV---TRHGRSWEMRF--TGGRQIQRLEAGWRGFALDNGLMLGDGCVFELLdGKpEGV 163 67789999999999999999555322.233334...48*********..9999999************************652666666 PP ..EEEEE- CS B3 91 elvvkvfr 98 ++v+v+r Sobic.006G050900.1.p 164 VFRVQVLR 171 66666665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.31E-16 | 75 | 176 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.6E-15 | 75 | 172 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.75E-14 | 76 | 171 | No hit | No description |
PROSITE profile | PS50863 | 12.182 | 78 | 173 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.4E-12 | 79 | 169 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 195 aa Download sequence Send to blast |
MDGWFFLLSS VLTHQSSKSL RRPSRKVVMS KGKSVAMSSA GHSAGASPTD GGADPLSMSE 60 TPCAMQPGVL PLLGRPYFTC ILCKSHVNQP FQVVVPRSLA PFLPATTVPA TVTRHGRSWE 120 MRFTGGRQIQ RLEAGWRGFA LDNGLMLGDG CVFELLDGKP EGVVFRVQVL RAHIPEEIRE 180 RAGGYTSSTP ILID* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sobic.006G050900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU954164 | 1e-173 | EU954164.1 Zea mays clone 1457632 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021319641.1 | 1e-141 | B3 domain-containing protein Os04g0386900 | ||||
Swissprot | Q7XLP4 | 9e-64 | Y4869_ORYSJ; B3 domain-containing protein Os04g0386900 | ||||
TrEMBL | A0A1B6PKA3 | 1e-140 | A0A1B6PKA3_SORBI; Uncharacterized protein | ||||
STRING | GRMZM2G126194_P01 | 2e-88 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8954 | 35 | 45 | Representative plant | OGRP7665 | 9 | 16 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sobic.006G050900.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|