PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G047200.1.p
Common NameSb06g012030, SORBIDRAFT_06g012030
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 367aa    MW: 39142.4 Da    PI: 4.727
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G047200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.53.2e-10165209655
                           HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              Er+RR r+++++ eLr+l+P+      +K++Ka+i   Av Y+k+Lq
  Sobic.006G047200.1.p 165 IVSERKRRVRMKEKLYELRSLVPNI-----TKMDKASIIADAVVYVKNLQ 209
                           568*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.14E-15156227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.98E-13156210No hitNo description
PROSITE profilePS5088815.383159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-15161225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-11165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-7165209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034756Biological Processregulation of iron ion transport
GO:0071281Biological Processcellular response to iron ion
GO:0071369Biological Processcellular response to ethylene stimulus
GO:0071732Biological Processcellular response to nitric oxide
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MDMEHQLQQL LHLEHFMPSS PGFFAVDSGQ DPAHFPNGGL FVEPHVGATD DDGGWVEDLM  60
QLGEELFGGQ ADGDDDVNGT GAGGMLGDDD HYQQQWQCDD DDDGGGSPDG PPPSISLDDD  120
ASPPSGEQGA GEAGELASEP HPLREDGDDV SAGATRKRRD RSKTIVSERK RRVRMKEKLY  180
ELRSLVPNIT KMDKASIIAD AVVYVKNLQA HARNLKEEVA ALEARPMSPA SRQEQPQPQH  240
GRRAGAAGRR QQQQHAGSSV GSGARVMHVG AAQVGEGRFF VTVECERRDG VAAPLCAAAE  300
SLACFRVESS SIGRSGPDRV VSTLTLKVVS QRVGGDAAIG EASVKLWMMA ALLKEGFRPE  360
ATVQMS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156171KRRDRSKTIVSERKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G047200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269721e-121KJ726972.1 Zea mays clone pUT3673 bHLH transcription factor (bHLH100) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002447667.20.0transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
TrEMBLA0A1B6PK800.0A0A1B6PK80_SORBI; Uncharacterized protein
STRINGSb06g012030.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55463057
Representative plantOGRP72711118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.11e-37FER-like regulator of iron uptake