PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.006G042900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | FAR1 | ||||||||
Protein Properties | Length: 810aa MW: 92023.7 Da PI: 9.6354 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 56.1 | 1.2e-17 | 135 | 214 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fYn Y+ evGF +r+s+ +++ n+ +tk++++Cs+eg+++++k++ + rtgCka++++ + kd+ w++++ ++eHnH++ Sobic.006G042900.1.p 135 EFYNLYSWEVGFGIRTSRGRTN-GNDYTTKKDLCCSCEGRSRSQKTS---------SCRTGCKAMIRLLRLKDHSWYISRSVTEHNHSM 213 6****************99998.6666************99987766.........99*****************************98 PP FAR1 90 a 90 + Sobic.006G042900.1.p 214 S 214 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.0E-13 | 135 | 214 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.3E-27 | 336 | 428 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.829 | 617 | 651 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.0045 | 626 | 653 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 810 aa Download sequence Send to blast |
MLDTATTAAV LAATCRSGAK QSVFLGRHVG GVEGSSAGLR PPALVGGMEG TGGEECCGGS 60 TSGTSIATEG DAKHLTTSYD CKKRKRGMSG PDAKISPAEE SAMTKAIKSS KEREGEPIFY 120 PYEGTRFNSF EEAKEFYNLY SWEVGFGIRT SRGRTNGNDY TTKKDLCCSC EGRSRSQKTS 180 SCRTGCKAMI RLLRLKDHSW YISRSVTEHN HSMSATCGEK KQWLSHSEID PLTKDFIRRL 240 RENNVTTGRV CSILGTSNGV GGLPVRREVI RSVCARLAQE NIEDDISKTM TLLDNMKMKD 300 PSMQIRYKLD DSGRILHMLW CTGRNKNDYD RFGDALTFDT TYRTNLYNLP FGLFIGVNNH 360 FQSTVFGGVL LTSEKTEDFE WAFSNFVDVM RGKEPRTILT DQCQAMAAAI KTTLTSARHR 420 WCKWHVLRKA KQWLGQVYSK NNGFKKEFHK LVTEEVSKYK FERRWRQLVR KYKVEDNKFL 480 KRIYQNRGMW ARPYFMDVFC AGMTSTQRSE SANHMLKQFI QRSSPMHIFV SKFSEFQNDR 540 KEQEDTEVHF TKQMQRKRRI GVPLERHAEE VYTRAMYERL YNELYRAGSY VMKGRDKADG 600 YLVVHYKELG TADERIFVVT DEGDFVNCSC GLYNHMGMLC RHALKVLMHQ DRVKLPSGNI 660 LDRWRRDVLE DPGNGRDDGV ESSSIESTAY IQKKLMVRRV LAMAGVDAAL DESGYKEALE 720 ALDKIISLRK DQKLGEQAVI SGDGSIKPTC CPNRPKKKGR PCSTSLKSYE TNLKKQKRTE 780 QGKKRYTSST SEDEENPMSG KTKALNEIK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.006G042900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021310926.1 | 0.0 | protein FAR1-RELATED SEQUENCE 11 | ||||
TrEMBL | A0A1B6PK38 | 0.0 | A0A1B6PK38_SORBI; Uncharacterized protein | ||||
STRING | Sb08g016320.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 | Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 6e-80 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.006G042900.1.p |