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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.006G034900.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 767aa MW: 84356.3 Da PI: 5.1758 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.5 | 3.1e-20 | 72 | 122 | 6 | 56 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +f +q++eLe+ F+ +++p+ + r+eLA+k+gL+erqVk+WFqNrR ++k Sobic.006G034900.3.p 72 RFAMHQIQELEAQFRVCSHPNPDVRQELATKIGLEERQVKFWFQNRRSQMK 122 6999********************************************998 PP | |||||||
2 | START | 121.2 | 1.4e-38 | 244 | 468 | 3 | 205 |
HHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS START 3 aeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....k 78 a +a++e+v +a+ +ep+Wv+ + + +++ lq+f+ + ea r++ + +++++lv++l d++ qW+++++ Sobic.006G034900.3.p 244 AARAMKEFVMLATKGEPMWVLAKdgeKLNHQEYILQTFPG-LLglcpqgFVEEATRETDMIKGTAMDLVSILTDVN-QWSQMFPsmvaY 330 6789*******************99444556666788844.33699988899************************.*******77777 PP EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE....-TTS--.-TTSEE-EESSEEEEEEE CS START 79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvd....seqkppesssvvRaellpSgiliep 156 ++ +vissg g +qlm+ el + sp R + f+R+++ + g+w++vdvSvd +eq+ +++s ++llpSg+l+e+ Sobic.006G034900.3.p 331 VSSSNVISSGsfslhdGLIQLMNVELWVQSPRLLnRSVKFLRFSKMMANGRWAVVDVSVDgiygVEQEGSSTSYTTGCRLLPSGCLLED 419 7888999999*********************6655*************************444456666657777889*********** PP ECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 157 ksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205 +s+g++kvtwv h+++++ +++ l+r+l++sg+a ga +w++ lq+qce Sobic.006G034900.3.p 420 MSGGYCKVTWVVHAEYDETTVPFLFRPLLQSGQALGACRWLRSLQKQCE 468 ************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.38E-17 | 54 | 122 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.6E-18 | 60 | 122 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.455 | 64 | 124 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.9E-17 | 66 | 128 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.65E-17 | 72 | 122 | No hit | No description |
Pfam | PF00046 | 1.1E-17 | 72 | 122 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 9.8E-5 | 95 | 104 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 99 | 122 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 9.8E-5 | 104 | 120 | IPR000047 | Helix-turn-helix motif |
PROSITE profile | PS50848 | 31.268 | 233 | 472 | IPR002913 | START domain |
CDD | cd08875 | 7.38E-73 | 238 | 468 | No hit | No description |
SuperFamily | SSF55961 | 4.32E-20 | 241 | 468 | No hit | No description |
SMART | SM00234 | 2.9E-16 | 242 | 469 | IPR002913 | START domain |
Pfam | PF01852 | 1.9E-31 | 244 | 468 | IPR002913 | START domain |
SuperFamily | SSF55961 | 6.23E-7 | 496 | 737 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 767 aa Download sequence Send to blast |
MDNGGQLNNN SNEQDNDGFT MDEIPDLPWN SHMEYDVDAF LGAEDHVNTN QTTDDVDHRS 60 PVGETPSKGV KRFAMHQIQE LEAQFRVCSH PNPDVRQELA TKIGLEERQV KFWFQNRRSQ 120 MKVKAYGDDN KGIRQELAKL KAENEELKQR RQNPICFMCT NPIAAIQSEN WRLLNDNTRL 180 KDEYVRSKAH MDRLIREAAA EHPPSAMRSS DHHLASAHMN MDPVALTGNC RTTTNLEATL 240 TSHAARAMKE FVMLATKGEP MWVLAKDGEK LNHQEYILQT FPGLLGLCPQ GFVEEATRET 300 DMIKGTAMDL VSILTDVNQW SQMFPSMVAY VSSSNVISSG SFSLHDGLIQ LMNVELWVQS 360 PRLLNRSVKF LRFSKMMANG RWAVVDVSVD GIYGVEQEGS STSYTTGCRL LPSGCLLEDM 420 SGGYCKVTWV VHAEYDETTV PFLFRPLLQS GQALGACRWL RSLQKQCEYI TVLPSSHVLP 480 SSSSSSAIST LGVGRRSVME LAGQMMVSFY AAVSGPVIVP ATSSVNEWRL VSNGNGTERV 540 EAFVRLVTWN CADIMPGEPS VTVLSATTTV WLPGTPPLCV FEYLCDLQRR GEWDTHVDAG 600 EVKELSSVAT SPQLPGNNVV SVLEPTTVVT DETESSKVLI LQETSTDVSC FLVVYSLIEE 660 SLMRGIMDGR ERSNIFVLPS GFAILPDGHG KAHADHTAAN SSNSAPIDSR NNNAGSIVSV 720 AFQTLLPGNL SSNLDNTGAF EDARLQVCHA ITKIKAAVGA SNIIPA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.006G034900.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022684238.1 | 0.0 | homeobox-leucine zipper protein ROC6-like | ||||
TrEMBL | A0A1Z5RD06 | 0.0 | A0A1Z5RD06_SORBI; Uncharacterized protein | ||||
STRING | Sb06g004510.1 | 0.0 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61150.1 | 1e-115 | homeodomain GLABROUS 1 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.006G034900.3.p |