PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G034900.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family HD-ZIP
Protein Properties Length: 767aa    MW: 84356.3 Da    PI: 5.1758
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G034900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.53.1e-2072122656
                           S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           +f  +q++eLe+ F+ +++p+ + r+eLA+k+gL+erqVk+WFqNrR ++k
  Sobic.006G034900.1.p  72 RFAMHQIQELEAQFRVCSHPNPDVRQELATKIGLEERQVKFWFQNRRSQMK 122
                           6999********************************************998 PP
2START121.21.4e-382444683205
                           HHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
                 START   3 aeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....k 78 
                           a +a++e+v +a+ +ep+Wv+     + + +++ lq+f+          +  ea r++ +  +++++lv++l d++ qW+++++     
  Sobic.006G034900.1.p 244 AARAMKEFVMLATKGEPMWVLAKdgeKLNHQEYILQTFPG-LLglcpqgFVEEATRETDMIKGTAMDLVSILTDVN-QWSQMFPsmvaY 330
                           6789*******************99444556666788844.33699988899************************.*******77777 PP

                           EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE....-TTS--.-TTSEE-EESSEEEEEEE CS
                 START  79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvd....seqkppesssvvRaellpSgiliep 156
                           ++  +vissg      g +qlm+ el + sp    R + f+R+++ +  g+w++vdvSvd    +eq+ +++s    ++llpSg+l+e+
  Sobic.006G034900.1.p 331 VSSSNVISSGsfslhdGLIQLMNVELWVQSPRLLnRSVKFLRFSKMMANGRWAVVDVSVDgiygVEQEGSSTSYTTGCRLLPSGCLLED 419
                           7888999999*********************6655*************************444456666657777889*********** PP

                           ECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                 START 157 ksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                           +s+g++kvtwv h+++++ +++ l+r+l++sg+a ga +w++ lq+qce
  Sobic.006G034900.1.p 420 MSGGYCKVTWVVHAEYDETTVPFLFRPLLQSGQALGACRWLRSLQKQCE 468
                           ************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.38E-1754122IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.6E-1860122IPR009057Homeodomain-like
PROSITE profilePS5007116.45564124IPR001356Homeobox domain
SMARTSM003892.9E-1766128IPR001356Homeobox domain
CDDcd000864.65E-1772122No hitNo description
PfamPF000461.1E-1772122IPR001356Homeobox domain
PRINTSPR000319.8E-595104IPR000047Helix-turn-helix motif
PROSITE patternPS00027099122IPR017970Homeobox, conserved site
PRINTSPR000319.8E-5104120IPR000047Helix-turn-helix motif
PROSITE profilePS5084831.268233472IPR002913START domain
CDDcd088757.38E-73238468No hitNo description
SuperFamilySSF559614.32E-20241468No hitNo description
SMARTSM002342.9E-16242469IPR002913START domain
PfamPF018521.9E-31244468IPR002913START domain
SuperFamilySSF559616.23E-7496737No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 767 aa     Download sequence    Send to blast
MDNGGQLNNN SNEQDNDGFT MDEIPDLPWN SHMEYDVDAF LGAEDHVNTN QTTDDVDHRS  60
PVGETPSKGV KRFAMHQIQE LEAQFRVCSH PNPDVRQELA TKIGLEERQV KFWFQNRRSQ  120
MKVKAYGDDN KGIRQELAKL KAENEELKQR RQNPICFMCT NPIAAIQSEN WRLLNDNTRL  180
KDEYVRSKAH MDRLIREAAA EHPPSAMRSS DHHLASAHMN MDPVALTGNC RTTTNLEATL  240
TSHAARAMKE FVMLATKGEP MWVLAKDGEK LNHQEYILQT FPGLLGLCPQ GFVEEATRET  300
DMIKGTAMDL VSILTDVNQW SQMFPSMVAY VSSSNVISSG SFSLHDGLIQ LMNVELWVQS  360
PRLLNRSVKF LRFSKMMANG RWAVVDVSVD GIYGVEQEGS STSYTTGCRL LPSGCLLEDM  420
SGGYCKVTWV VHAEYDETTV PFLFRPLLQS GQALGACRWL RSLQKQCEYI TVLPSSHVLP  480
SSSSSSAIST LGVGRRSVME LAGQMMVSFY AAVSGPVIVP ATSSVNEWRL VSNGNGTERV  540
EAFVRLVTWN CADIMPGEPS VTVLSATTTV WLPGTPPLCV FEYLCDLQRR GEWDTHVDAG  600
EVKELSSVAT SPQLPGNNVV SVLEPTTVVT DETESSKVLI LQETSTDVSC FLVVYSLIEE  660
SLMRGIMDGR ERSNIFVLPS GFAILPDGHG KAHADHTAAN SSNSAPIDSR NNNAGSIVSV  720
AFQTLLPGNL SSNLDNTGAF EDARLQVCHA ITKIKAAVGA SNIIPA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G034900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684238.10.0homeobox-leucine zipper protein ROC6-like
TrEMBLA0A1Z5RD060.0A0A1Z5RD06_SORBI; Uncharacterized protein
STRINGSb06g004510.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.11e-115homeodomain GLABROUS 1