 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sobic.006G025000.2.p |
| Common Name | Sb06g002260, SORBIDRAFT_06g002260 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
| Family |
TCP |
| Protein Properties |
Length: 178aa MW: 18197.4 Da PI: 8.9137 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sobic.006G025000.2.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 101.1 | 2e-31 | 58 | 134 | 8 | 81 |
TCP 8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssss 81
+ ++h+kv gR+RRvR++a +aar+F+L++eLG+ +d++tieWLl+qa+p+i+++tgt+ +++++ ++ss+ +
Sobic.006G025000.2.p 58 SVDRHAKVAGRGRRVRIPAMVAARVFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTGVTTEEAPsvlVPVSSVAA 134
569*******************************************************5554422212333333322 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 178 aa
Download sequence Send
to blast |
MSSSSELYNL VPAPQTLNPP APAAADLSSS TAVAAAAAAA PGDGALRGRV RRPVGSSSVD 60
RHAKVAGRGR RVRIPAMVAA RVFQLTRELG HRSDGETIEW LLRQAEPSII AATGTGVTTE 120
EAPSVLVPVS SVAATASMTP VSYSYYTALL MQPPTAKESP PASAYVSGTA AEENNNN*
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings and leaves, mostly in the lower region rich in dividing cells. {ECO:0000269|PubMed:9338963}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | KJ726999 | 1e-118 | KJ726999.1 Zea mays clone pUT3971 TCP transcription factor (TCP40) gene, partial cds. |
