PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G008800.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family E2F/DP
Protein Properties Length: 491aa    MW: 53062.8 Da    PI: 4.746
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G008800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP78.66e-25210275171
               E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                           r+++sL llt+kf++ll+ +e+g+++ln++a++L   +v  ++RR YDi+NVLe+++liek  kn irwkg
  Sobic.006G008800.1.p 210 RYDNSLSLLTKKFINLLQGAEDGTLDLNKAAETL---EV--QKRRMYDITNVLEGVHLIEKGLKNMIRWKG 275
                           689*******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1014476.54E-67079No hitNo description
Gene3DG3DSA:1.10.10.105.5E-27207276IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.3E-31210275IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.02E-15210273IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.5E-22212275IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146602.79E-35287399No hitNo description
SuperFamilySSF1440741.8E-25287398No hitNo description
PfamPF164214.7E-26291396IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000902Biological Processcell morphogenesis
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0051782Biological Processnegative regulation of cell division
GO:0005667Cellular Componenttranscription factor complex
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MDGGSSSLPL PQPPPPPPPQ VYLRRGSSVP PPGTPVQAPP RVQLFRAPAT PIPIFSSKPR  60
AAVRSPIPPP PPPPPPPPPP AAAALAASAP APAPAAATAQ APPLPPPPTS ASTDQPPPQQ  120
AGTMAPPPAP EPAGKPNAQL NEQNSGEYSQ SENNMVETAQ GHDKETTPGP VKAIKRIKKV  180
KSSKHNLGNT NSGAIEGDAD PSLSSLNHCR YDNSLSLLTK KFINLLQGAE DGTLDLNKAA  240
ETLEVQKRRM YDITNVLEGV HLIEKGLKNM IRWKGFDMSK PKEIECQISS LKEELESLYD  300
EEFRLDDEIR EAKEKLQTLT LDEDKRKLLY LLKEDINKIP HFQGSTLIAI NAPHGTCLEV  360
PDPNADQDMY GNLGLQEQHY KIVLRSSMGP IDCYLISDRQ EIFNPDQLAA ADRLEPAVAT  420
DSSQALQQMD CDPTQALEKE WGNGGCMHTT EPSRKQENGI LRIVPSDSDV DADYWLASGV  480
DVSMTDEWGT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A5e-21210276774PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G008800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0647370.0BT064737.1 Zea mays full-length cDNA clone ZM_BFb0090H09 mRNA, complete cds.
GenBankKJ7268780.0KJ726878.1 Zea mays clone pUT3419 E2F-DP transcription factor (E2F5) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021319053.10.0transcription factor E2FB
TrEMBLC5YBP50.0C5YBP5_SORBI; Uncharacterized protein
STRINGSb06g000890.10.0(Sorghum bicolor)
STRINGGRMZM2G050590_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62537148
Representative plantOGRP1478044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.22e-84E2F transcription factor 1