PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G004100.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 316aa    MW: 34830.6 Da    PI: 9.0053
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G004100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM102.55.8e-32802262128
                   NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.........lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr 76 
                           p+G+rF+P+d+el+ e+L+  v +k+         +   +    +i+e  +i++++P++Lp  v+ + ++ +fF+k++k+y+t++r++r
  Sobic.006G004100.2.p  80 PAGLRFNPSDQELI-EHLESMVLAKEgggsrahalI---NhfipTIEEDiGICYTHPENLP-GVTRDGQSKHFFHKTSKAYPTSTRTRR 163
                           89************.99****999998887776552...133333554449**********.556677899****************** PP

                   NAM  77 a............tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           +            + +++W+ tg+++++++ +g+++g kk+Lv+++ ++ k ekt+Wvmh+y+l
  Sobic.006G004100.2.p 164 KimsersqrgsedVGEARWHRTGNTRPLIV-GGRQKGFKKILVLHNVNHGKREKTNWVMHQYHL 226
                           87999999999888899*************.99*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-3374245IPR003441NAC domain
PROSITE profilePS5100529.73379245IPR003441NAC domain
PfamPF023658.4E-1480226IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
RNSCFALLCL GGVLRPHSSL AGSPPSGLRP PHRSELLHRD ARSTADAMGD SGANISSNGT  60
DARASLACPN CNYLNLAGFP AGLRFNPSDQ ELIEHLESMV LAKEGGGSRA HALINHFIPT  120
IEEDIGICYT HPENLPGVTR DGQSKHFFHK TSKAYPTSTR TRRKIMSERS QRGSEDVGEA  180
RWHRTGNTRP LIVGGRQKGF KKILVLHNVN HGKREKTNWV MHQYHLGMSE EEKDGELVLS  240
KVFYRCPNTT MIEQNDEKVE VTSEATPNIL PVSGLQQSLQ LLSPWCKCSS TKCIGMLKVT  300
ASASLYLQRC FTRLV*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G004100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002447408.20.0NAC domain-containing protein 73
SwissprotQ9M0F81e-70NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A1Z5RBA80.0A0A1Z5RBA8_SORBI; Uncharacterized protein (Fragment)
STRINGSb06g000536.11e-116(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3774923
Representative plantOGRP5251585
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.16e-73NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]