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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.006G003800.2.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
NAC |
Protein Properties |
Length: 359aa MW: 38903.3 Da PI: 6.7939 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.006G003800.2.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 100.7 | 2e-31 | 32 | 178 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk..........leleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.. 77
p+G++F P+d+el+ e+L+ v k+ ++ ++i+ di++++P++Lp v+++ + +fF+k++k+y+tg+rk+r+
Sobic.006G003800.2.p 32 PAGVKFAPSDQELI-EHLESMVLVKEgggsrahpllSHFISTIEGGnDICYTHPENLP-GVAKDGLSKHFFHKTSKAYPTGTRKRRKiq 118
89************.99****999988888886664333234666669**********.555666799******************879 PP
NAM 78 ..........tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
+ ++ W++tg++++v++ +g+++g+kk+Lv+++ ++ ekt+W+mh+y+l
Sobic.006G003800.2.p 119 sergqrssedAGEAHWHKTGRTHAVIV-GGRQKGCKKILVLHNIKQGMREKTNWIMHQYHL 178
999999888777999************.99************9999999**********98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 359 aa
Download sequence Send
to blast |
MGDSSATNGS NDTEATASLA CPNCNLNLAG FPAGVKFAPS DQELIEHLES MVLVKEGGGS 60 RAHPLLSHFI STIEGGNDIC YTHPENLPGV AKDGLSKHFF HKTSKAYPTG TRKRRKIQSE 120 RGQRSSEDAG EAHWHKTGRT HAVIVGGRQK GCKKILVLHN IKQGMREKTN WIMHQYHLGM 180 SDADDEKDGE LVLSKVFYRC PDATMVEVEH NNEKVEVTSE ATSNILRVSG AAAVTAATVN 240 MVQQQQHRPQ RQAHGQDQCK FAPPNMFQEA GVGELVSGDQ GQVHDNNHHI PSQHLVQSVH 300 MEPDTTLSLQ VGVGDPVSGD QGQVHGNNHH IPSQNHVQSV DTEPVTTLSL ALSAGWCK*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |