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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Sobic.005G230400.2.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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| Family |
GRAS |
| Protein Properties |
Length: 480aa MW: 53886.2 Da PI: 5.9121 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sobic.005G230400.2.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 164.1 | 1.1e-50 | 202 | 431 | 2 | 240 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90
+lL++ A+av + d + +++lL++++e+asp+gd++qRl+ f+++L+arla++ s++y++l++++ts +e l+a+++f
Sobic.005G230400.2.p 202 HTLLIHRAKAVID-DRQSVDELLSQMKEHASPTGDATQRLVYWFVQGLEARLAGTESQVYRSLTANRTS---LVEFLKAYQFFM----- 281
5789999**9987.8999*******************************************99999998...9*******9985..... PP
GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfe 177
k +++ aN++Il+a+ g +++Hi+D+++ G+QW Ll+ L +R++gpp++RiT ++ p++g ++ + e+g+rL++ A+el ++f
Sobic.005G230400.2.p 282 -KAAFMFANKTILDAAIGRSKLHIVDYGLRSGFQWTELLRLLGTRDGGPPQVRITSIDLPQPGfhPANHMAEMGHRLTSCAHELPLSFC 369
.6799*********************************************************9999****************9987777 PP
GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvv 240
+ v ++++ +++L+v+p+E+l+Vn ++ +l+desv +++ +rd vL+ +++++P+v++
Sobic.005G230400.2.p 370 YVV---APWHTVCIDDLNVEPDEVLVVNDLFNFRTLMDESVISDNpsPRDVVLSNIRKMEPDVFI 431
765...79********************************98887779***************97 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 480 aa
Download sequence Send
to blast |
MAAPRVVRGF TPAPRVDVDA ASSSYLSRIS LLMEEEDEED DLADHPAFLH PFTQILSGAP 60
LPDQAPVFPG GTPPEDKEYR TDMFTAAFFK AVEEATATLL ARDTSSGGGK DRRDRHTVGG 120
DDELEADAGR TSKMAMSESE EAGAREVFDE MMLRGFDVCS KEMEGLAISV ENVPAKDDDK 180
KKARKRSRAW GKRRPAKVIE LHTLLIHRAK AVIDDRQSVD ELLSQMKEHA SPTGDATQRL 240
VYWFVQGLEA RLAGTESQVY RSLTANRTSL VEFLKAYQFF MKAAFMFANK TILDAAIGRS 300
KLHIVDYGLR SGFQWTELLR LLGTRDGGPP QVRITSIDLP QPGFHPANHM AEMGHRLTSC 360
AHELPLSFCY VVAPWHTVCI DDLNVEPDEV LVVNDLFNFR TLMDESVISD NPSPRDVVLS 420
NIRKMEPDVF IQAVHVREWT VWNVVRHKLW QVRNQRADLR QLPLNGETVK MVRDMVKNQ*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5b3h_B | 1e-20 | 203 | 429 | 35 | 275 | Protein SHORT-ROOT |
| 5b3h_E | 1e-20 | 203 | 429 | 35 | 275 | Protein SHORT-ROOT |
| 5hyz_A | 8e-21 | 201 | 406 | 5 | 218 | GRAS family transcription factor containing protein, expressed |
| Search in ModeBase |
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 179 | 193 | KKKARKRSRAWGKRR |
| 2 | 182 | 188 | ARKRSRA |
