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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Sobic.005G217400.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
| Family |
ERF |
| Protein Properties |
Length: 169aa MW: 18172.6 Da PI: 9.482 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sobic.005G217400.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 45.1 | 2.5e-14 | 14 | 59 | 3 | 51 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51
+ GVr ++ +g ++AeIrd + +g +r++lg+f+tae Aa a+++a+
Sobic.005G217400.1.p 14 FIGVRPRP-WGTFAAEIRDSTRRG--ARVWLGTFDTAEAAALAYDQAAF 59
67***999.**********43343..*********************97 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 169 aa
Download sequence Send
to blast |
MTDDASSRGA TAFFIGVRPR PWGTFAAEIR DSTRRGARVW LGTFDTAEAA ALAYDQAAFA 60
APGAAAVFNF PVDCVRESLA PLELAATLGS PVLALKRRHC KRKHRRRRRR KSSSSSRSSP 120
LPSSNVSMAA PPQQQVISQC CSSIIELEDL GADYLDELLR VSCESTTG*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 95 | 110 | KRRHCKRKHRRRRRRK |
| 2 | 96 | 102 | RRHCKRK |
| 3 | 101 | 109 | RKHRRRRRR |
| 4 | 104 | 110 | RRRRRRK |
| Functional Description ? help
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| Source |
Description |
| UniProt | May act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11950980}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation. {ECO:0000269|PubMed:11950980}. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT2G31230.1 | 4e-20 | ethylene-responsive element binding factor 15 |
