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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Sobic.005G209300.2.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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| Family |
GRAS |
| Protein Properties |
Length: 498aa MW: 57659.5 Da PI: 7.7644 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sobic.005G209300.2.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 298.4 | 1.8e-91 | 120 | 490 | 3 | 373 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91
+lL++cA+a++ +d+ +a + L +++++as +gd++qRla++ft++L+ar+ ++ ++ + l +++ s ++ l+a+ l+ +v+ +l
Sobic.005G209300.2.p 120 TLLISCAQALAVDDHMRACEHLMQIKQHASATGDATQRLAHCFTKGLEARIGAKGRQIWQLLMSEHPS---LVDFLKAYDLYTKVCCFL 205
68*********************************************************999888888...9***************** PP
GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvp.fe 177
k++++ +I++a+ g++r+Hi+D+++ +G+QW+ Ll+ LasR++gpp+++ T++++p+s +e++e++g rL+k+A+elg p f+
Sobic.005G209300.2.p 206 KVTFIFSTMTIMQAMVGKSRLHIVDYGMRYGFQWAGLLRLLASREGGPPEVKFTAIARPKSAyyPSEQIEKIGCRLKKYAHELGFPlFK 294
************************************************************9999*********************979* PP
GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyy 264
f++ +++++ed+++ +++++ +E+l+V+ +++ l++es +s +rd+vL+ +k+++P+v++ + ++ ++ ++sFl rf e l yy
Sobic.005G209300.2.p 295 FHA-IMRNWEDISIMDMHTDDDEVLVVSDMFSFSILMEESIFFDSqsPRDTVLNNIKKMRPDVFIQSVSNRSY-GSSFLSRFREMLFYY 381
***.7********************************99986665559*****************99999999.679************ PP
GRAS 265 salfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrvee 353
+alfd+l+a++pres+ r+++E+++lg i n ++ceg + +er e++++W+ r ++aG++++pl+++++k ++ +rk++ + +++ +
Sobic.005G209300.2.p 382 MALFDMLDATIPRESKSRSVLEQVVLGYYIFNDISCEGMDIVERPEKYRQWQTRNQRAGLRQLPLESSIVKAVEDEVRKHYHKDFMICQ 470
*********************************************************************************888***** PP
GRAS 354 esgslvlgWkdrpLvsvSaW 373
+ ++l++gW+++ L + + W
Sobic.005G209300.2.p 471 DGQWLLQGWMGHVLAAHTTW 490
*******************9 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 498 aa
Download sequence Send
to blast |
MEEANMFLLK DNNFSKDEQV NQIRESSVIG SRIKKRYNRD HLLEEEEEEV RSTSKAMMMI 60
KEPEEKCGNE MLEKMMLHVY DTCIIKGMER VTINNSGADK RNKKSRRIKT TRKNMVDIGT 120
LLISCAQALA VDDHMRACEH LMQIKQHASA TGDATQRLAH CFTKGLEARI GAKGRQIWQL 180
LMSEHPSLVD FLKAYDLYTK VCCFLKVTFI FSTMTIMQAM VGKSRLHIVD YGMRYGFQWA 240
GLLRLLASRE GGPPEVKFTA IARPKSAYYP SEQIEKIGCR LKKYAHELGF PLFKFHAIMR 300
NWEDISIMDM HTDDDEVLVV SDMFSFSILM EESIFFDSQS PRDTVLNNIK KMRPDVFIQS 360
VSNRSYGSSF LSRFREMLFY YMALFDMLDA TIPRESKSRS VLEQVVLGYY IFNDISCEGM 420
DIVERPEKYR QWQTRNQRAG LRQLPLESSI VKAVEDEVRK HYHKDFMICQ DGQWLLQGWM 480
GHVLAAHTTW VADDASS*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | KF184905 | 0.0 | KF184905.1 Saccharum hybrid cultivar R570 clone BAC 149L06 complete sequence. |
