PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sobic.005G180300.1.p | ||||||||
Common Name | Sb05g023915, SORBIDRAFT_05g023915 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 169aa MW: 18856.9 Da PI: 9.2651 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 26.8 | 6.7e-09 | 11 | 33 | 20 | 42 |
HHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 20 ilKKAeELSvLCdaevaviifss 42 + KKA+EL +LC+++ +v+++++ Sobic.005G180300.1.p 11 LEKKASELTTLCGIKLCVVVYGQ 33 66*******************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00319 | 1.5E-7 | 8 | 33 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.89E-10 | 9 | 75 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 169 aa Download sequence Send to blast |
MAHKKRCSKS LEKKASELTT LCGIKLCVVV YGQGEAQPKV WPSNEEAKDL LMKFNRRLDV 60 SSLKKTKNQE EFLQSRSLKL HEQVSKLDLE NREHVTLDVL HDSMVGGRPG LVGSNKGELL 120 SLRDMVDMKM RKIEARLQQL AVGEEVLPQP LPQDSYNLGA CSMLPSAK* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sobic.005G180300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021317822.1 | 3e-83 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A1B6PTA1 | 1e-119 | A0A1B6PTA1_SORBI; Uncharacterized protein | ||||
STRING | Sb05g023915.1 | 1e-116 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP363 | 36 | 202 | Representative plant | OGRP114 | 13 | 173 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G65300.1 | 1e-15 | AGAMOUS-like 38 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sobic.005G180300.1.p |
Entrez Gene | 8066699 |