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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.005G178400.2.p | ||||||||
Common Name | Sb05g023765, SORBIDRAFT_05g023765 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bHLH | ||||||||
Protein Properties | Length: 135aa MW: 13862.5 Da PI: 7.5219 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.2 | 1.9e-05 | 42 | 82 | 21 | 54 |
HHHHCTSCC.C........TTS-.STCHHHHHHHHHHHHHH CS HLH 21 eeLrellPk.as.....kapskK.lsKaeiLekAveYIksL 54 ++Lr llP+ a ka++ s a +L++A+ YI+ L Sobic.005G178400.2.p 42 SRLRALLPPeAAaanngKAKASSsSSRARVLREACVYIRRL 82 79*******6669**9955555559**************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.4E-4 | 41 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MSSSSSSRRR RRSRLSSPAA GGAAAPVQEQ VVVAAADDEL VSRLRALLPP EAAAANNGKA 60 KASSSSSRAR VLREACVYIR RLHAELDAAA EHLARLLDDD YPSAAAAAAV VVVDGANVNG 120 AGADDDELIR SLLM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.005G178400.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002449812.2 | 2e-85 | transcription factor ILI2 | ||||
TrEMBL | A0A1Z5RJF9 | 6e-84 | A0A1Z5RJF9_SORBI; Uncharacterized protein | ||||
STRING | Sb05g023765.1 | 1e-84 | (Sorghum bicolor) |
Link Out ? help Back to Top | |
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Phytozome | Sobic.005G178400.2.p |
Entrez Gene | 8066691 |