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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.005G177800.2.p | ||||||||
Common Name | Sb05g023730, SORBIDRAFT_05g023730 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bHLH | ||||||||
Protein Properties | Length: 274aa MW: 29346.3 Da PI: 5.6252 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.6 | 6e-05 | 37 | 86 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++ + erE+ Rd++N+ f eL ++l + + Ka++L A + +++L Sobic.005G177800.2.p 37 KKTHKAEREKLKRDQLNDLFVELGSMLDLD----RQNTGKATVLGDAARVLRDL 86 678899********************9886....56677888888777777665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.14E-11 | 33 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-8 | 34 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.06E-4 | 36 | 86 | No hit | No description |
PROSITE profile | PS50888 | 10.988 | 36 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0032 | 42 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MVADTESADS LPGSSNAASE TPAHGSIHQK SQENPSKKTH KAEREKLKRD QLNDLFVELG 60 SMLDLDRQNT GKATVLGDAA RVLRDLITQV ESLRKEQSAL VSERQYVSSE KNELEEENNS 120 LKSQISELQN ELCTRLRNSS LNQNSLGMSL PVANTVGPDL ATHPMPQQIW SNIPNLSSVS 180 MAHPTNAATL LHSRDHSADA GQGYAPQPRE LQLFPGASSS PERGCSGLGS DQPASSSLTD 240 SLPGQLCLSL PQSSQEGSSS GVVPRSRKEQ RNG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.005G177800.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT039027 | 1e-168 | BT039027.1 Zea mays full-length cDNA clone ZM_BFb0351N03 mRNA, complete cds. | |||
GenBank | BT088171 | 1e-168 | BT088171.1 Zea mays full-length cDNA clone ZM_BFc0043H09 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002451069.1 | 0.0 | transcription factor bHLH11 isoform X2 | ||||
Refseq | XP_021317141.1 | 0.0 | transcription factor bHLH11 isoform X2 | ||||
TrEMBL | C5Y5V2 | 0.0 | C5Y5V2_SORBI; Uncharacterized protein | ||||
STRING | Sb05g023730.1 | 0.0 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47640.3 | 3e-26 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.005G177800.2.p |
Entrez Gene | 8066689 |