PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Sobic.005G106366.1.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

FAR1

Protein Properties

Length: 473aa MW: 55796.9 Da PI: 9.9041

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.005G106366.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	43.5	1e-13	36	125	1	90
FAR1 1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 +fYn Y+ evGF v+ ++s+ + +++ ++++ +e +++ +++r t+ ++r+gC ak+++ +++d w+++ ++eHn Sobic.005G106366.1.p 36 EFYNMYSWEVGFGVKFNSSRPGpksSAKNTENAEQYRSMQEIVCQKSG---NDSRITTGTKRCGCPAKIRLLRTDDYGWYISLHVKEHN 121 6*************99986632233333344445444444444444...45888999************************** PP FAR1 87 Hela 90 Hel+ Sobic.005G106366.1.p 122 HELS 125 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-10	36	125	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.3E-29	247	340	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence Send to blast
MGTIERAMRS APTRKTEHIF EPEVGLVFDS REEAREFYNM YSWEVGFGVK FNSSRPGPKS 60 SAKNTENAEQ YRSMQEIVCQ KSGNDSRITT GTKRCGCPAK IRLLRTDDYG WYISLHVKEH 120 NHELSRTNGE KREWNSHRQI DPSMKEMIRN LRLNNVSLTR VHCIMGDVYG TSADVPWTKK 180 SLRTICSQIT RDQMGDDIKK TMDIFREMHE ADPGFRFSVE LDKHSRIRTL LWCSGRGREQ 240 YACFGDVVTF DTTYCTNIYK MPFGLFVGVN HHFQTTIFAG VLMRRETARS FKWVFKEFLN 300 LMGGKAPFTI LTDQCKAMAK AIRFVMPSTY HLWCKWHVMK RIRECLGPLY TKNKKFRDDF 360 WLVVNGMLTE DEFERAWDDL VTRYNLQKNS FMNRIYKSKK KWAKPWSKDK FCARMSSTQR 420 SESANFMLKR YVPRNSSMNH FVSQYNRMLY EREREEDIAE DKTKQFDVIL RN*

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence Send to blast

MGTIERAMRS APTRKTEHIF EPEVGLVFDS REEAREFYNM YSWEVGFGVK FNSSRPGPKS  60
SAKNTENAEQ YRSMQEIVCQ KSGNDSRITT GTKRCGCPAK IRLLRTDDYG WYISLHVKEH  120
NHELSRTNGE KREWNSHRQI DPSMKEMIRN LRLNNVSLTR VHCIMGDVYG TSADVPWTKK  180
SLRTICSQIT RDQMGDDIKK TMDIFREMHE ADPGFRFSVE LDKHSRIRTL LWCSGRGREQ  240
YACFGDVVTF DTTYCTNIYK MPFGLFVGVN HHFQTTIFAG VLMRRETARS FKWVFKEFLN  300
LMGGKAPFTI LTDQCKAMAK AIRFVMPSTY HLWCKWHVMK RIRECLGPLY TKNKKFRDDF  360
WLVVNGMLTE DEFERAWDDL VTRYNLQKNS FMNRIYKSKK KWAKPWSKDK FCARMSSTQR  420
SESANFMLKR YVPRNSSMNH FVSQYNRMLY EREREEDIAE DKTKQFDVIL RN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.005G106366.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020197126.1	1e-169	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A1Z5RIX1	0.0	A0A1Z5RIX1_SORBI; Uncharacterized protein
STRING	Sb05g009983.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-65	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Sobic.005G106366.1.p