PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G103100.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 283aa    MW: 30132.5 Da    PI: 7.2377
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G103100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.71e-16101150355
                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           + GVr ++ +g+++AeIrd + +g  +r++lg+f+t+e Aa a+++a+ + +g
  Sobic.005G103100.1.p 101 FIGVRKRP-WGKFAAEIRDSTRRG--ARVWLGTFDTPEAAALAYDQAAFAARG 150
                           67******.**********43343..**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.0E-30100164IPR001471AP2/ERF domain
PROSITE profilePS5103221.641100158IPR001471AP2/ERF domain
CDDcd000182.84E-12101135No hitNo description
PRINTSPR003672.1E-8101112IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-20101160IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-27101159IPR001471AP2/ERF domain
PfamPF008472.0E-12101150IPR001471AP2/ERF domain
PRINTSPR003672.1E-8124140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MEQGDPTHTS SASNCDDPAA AAPATAWLCH DTTHGDDMLL QQLAAILAPA DDECCSDDWL  60
SSSSSEAVHH HQRSWPLHAA NNGVVAWAAG GEKRETTTTA FIGVRKRPWG KFAAEIRDST  120
RRGARVWLGT FDTPEAAALA YDQAAFAARG AAAVLNFPVE RVTESLGALA LAGGTGGGGG  180
SPVLALKRRH SKRTRRRNKP FAATVTCDDS RNLKTQRRQP PVARRQCSGL SGVSSSCTAM  240
AAAVPQQQVT TSRELRYGVV ELEDLGTDYL DELLRVSSHL EN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-231011601574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G103100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276831e-108KJ727683.1 Zea mays clone pUT5611 AP2-EREBP transcription factor (EREB59) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021317564.10.0ethylene-responsive transcription factor ERF094-like
TrEMBLA0A1B6PRF50.0A0A1B6PRF5_SORBI; Uncharacterized protein
STRINGGRMZM2G073258_P013e-55(Zea mays)
STRINGGRMZM5G837876_P013e-55(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Representative plantOGRP1732823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06160.14e-20octadecanoid-responsive Arabidopsis AP2/ERF 59