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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.005G103000.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
ERF |
Protein Properties |
Length: 291aa MW: 31067.6 Da PI: 5.8186 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.005G103000.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 51.4 | 2.6e-16 | 111 | 158 | 5 | 55 |
AP2 5 GVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
GVr ++ +g+++AeIrd + k +r++lg+f+t+e Aa a+++a+ + +g
Sobic.005G103000.1.p 111 GVRKRP-WGKFAAEIRDsT--R-KGARVWLGTFDTPEAAALAYDQAAFAARG 158
9*****.**********32..2.24**********************99998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 291 aa
Download sequence Send
to blast |
MEQQSYCYDL PTTTLSSAPP AFDTTTTDDS DMLLQLEAFL LGTDDAEAEA EPTTEVVSSD 60 WSSSSSSSSS SAPTFPEVGL GAVARTTANT RGNGNQHRGT EDKRRRQALI GVRKRPWGKF 120 AAEIRDSTRK GARVWLGTFD TPEAAALAYD QAAFAARGAA AVLNFPVERV VESLGALQLP 180 LPGTGGGSPV LALKRRHSKR TRRRKVVVSP GTVIDVSNNT TKAAARLQQP VQQCSDASSS 240 IMAVASSSSS MPEQRLVPSQ CHRGGVVELE DLGDDYMQEL LRISSELNYC *
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ727683 | 7e-90 | KJ727683.1 Zea mays clone pUT5611 AP2-EREBP transcription factor (EREB59) gene, partial cds. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT2G31230.1 | 1e-21 | ethylene-responsive element binding factor 15 |